miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14700 3' -52.9 NC_003529.1 + 53273 0.66 0.977265
Target:  5'- cCGAU-UUG-CAggGGUGuCGUGGCCAu -3'
miRNA:   3'- -GCUGuAACuGUuaCCACcGCACCGGU- -5'
14700 3' -52.9 NC_003529.1 + 3251 0.66 0.969007
Target:  5'- gCGaACGUUGAC---GGUGGCGUuauuuuGGUCAa -3'
miRNA:   3'- -GC-UGUAACUGuuaCCACCGCA------CCGGU- -5'
14700 3' -52.9 NC_003529.1 + 31693 0.66 0.965832
Target:  5'- aCGGCAaUGGCGAUGG-GGCcaacaUGGCg- -3'
miRNA:   3'- -GCUGUaACUGUUACCaCCGc----ACCGgu -5'
14700 3' -52.9 NC_003529.1 + 143710 0.66 0.965832
Target:  5'- uGGCAUUGugaaacacgGCAAUGGc-GCGUGGCa- -3'
miRNA:   3'- gCUGUAAC---------UGUUACCacCGCACCGgu -5'
14700 3' -52.9 NC_003529.1 + 1388 0.67 0.962434
Target:  5'- cCGGCGgaggUGGCGGcGGUGGCGgcggUGGUUg -3'
miRNA:   3'- -GCUGUa---ACUGUUaCCACCGC----ACCGGu -5'
14700 3' -52.9 NC_003529.1 + 32776 0.67 0.961371
Target:  5'- cCGGCAggu-CGGUGGUGGCGUcgaguuccuugggcGGCaCAa -3'
miRNA:   3'- -GCUGUaacuGUUACCACCGCA--------------CCG-GU- -5'
14700 3' -52.9 NC_003529.1 + 24872 0.67 0.950853
Target:  5'- ------aGACGG-GGUGGCG-GGCCAa -3'
miRNA:   3'- gcuguaaCUGUUaCCACCGCaCCGGU- -5'
14700 3' -52.9 NC_003529.1 + 92706 0.67 0.946514
Target:  5'- gGugGUggcGGCGGUGGUGGCgGUGGa-- -3'
miRNA:   3'- gCugUAa--CUGUUACCACCG-CACCggu -5'
14700 3' -52.9 NC_003529.1 + 82891 0.67 0.946514
Target:  5'- cCGACAccaACGAaccGGUGGCGUGuGCCc -3'
miRNA:   3'- -GCUGUaacUGUUa--CCACCGCAC-CGGu -5'
14700 3' -52.9 NC_003529.1 + 105272 0.68 0.921109
Target:  5'- aCGGCGgcuGCGGUGGUGGUgGUGGUUg -3'
miRNA:   3'- -GCUGUaacUGUUACCACCG-CACCGGu -5'
14700 3' -52.9 NC_003529.1 + 68901 0.7 0.851963
Target:  5'- cCGACAcuUUcGAUGGguUGGUGGCGUacGGCCGg -3'
miRNA:   3'- -GCUGU--AA-CUGUU--ACCACCGCA--CCGGU- -5'
14700 3' -52.9 NC_003529.1 + 21857 0.72 0.790918
Target:  5'- uGAUGUUGACGAUGG-GGUG-GGCgAa -3'
miRNA:   3'- gCUGUAACUGUUACCaCCGCaCCGgU- -5'
14700 3' -52.9 NC_003529.1 + 3635 0.73 0.732653
Target:  5'- uCGGCGguggUGAUuguagguGUGGUGGuCGUGGUCAg -3'
miRNA:   3'- -GCUGUa---ACUGu------UACCACC-GCACCGGU- -5'
14700 3' -52.9 NC_003529.1 + 40030 1.09 0.005396
Target:  5'- cCGACAUUGACAAUGGUGGCGUGGCCAu -3'
miRNA:   3'- -GCUGUAACUGUUACCACCGCACCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.