miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14702 5' -45.8 NC_003529.1 + 67966 0.66 0.999978
Target:  5'- aUGGUUGACaauaaGGCGAGCAUUGCUc- -3'
miRNA:   3'- -GCUAGUUGcug--UCGUUCGUAAUGAua -5'
14702 5' -45.8 NC_003529.1 + 124206 0.66 0.999958
Target:  5'- aCGAUCAACaGCAGCA-GUuUUGCa-- -3'
miRNA:   3'- -GCUAGUUGcUGUCGUuCGuAAUGaua -5'
14702 5' -45.8 NC_003529.1 + 139713 0.66 0.999943
Target:  5'- uGAUCu-CGGCAGCAcacGGCucgaAUUACUGc -3'
miRNA:   3'- gCUAGuuGCUGUCGU---UCG----UAAUGAUa -5'
14702 5' -45.8 NC_003529.1 + 69960 0.67 0.999924
Target:  5'- uGAUgAACcGCGGCGgaGGCGUUACUu- -3'
miRNA:   3'- gCUAgUUGcUGUCGU--UCGUAAUGAua -5'
14702 5' -45.8 NC_003529.1 + 102506 0.67 0.999924
Target:  5'- aCGggUAGCGAaaaAGCGAGCAcUACa-- -3'
miRNA:   3'- -GCuaGUUGCUg--UCGUUCGUaAUGaua -5'
14702 5' -45.8 NC_003529.1 + 44241 0.67 0.999868
Target:  5'- aCGA---ACGugAGC-AGCGUUACUGa -3'
miRNA:   3'- -GCUaguUGCugUCGuUCGUAAUGAUa -5'
14702 5' -45.8 NC_003529.1 + 56420 0.67 0.999868
Target:  5'- aCGGaCAGCGACGGUGAuCAUUAUUGa -3'
miRNA:   3'- -GCUaGUUGCUGUCGUUcGUAAUGAUa -5'
14702 5' -45.8 NC_003529.1 + 24308 0.67 0.999776
Target:  5'- -cAUUGACGGCAGCAAGUAUU-UUAa -3'
miRNA:   3'- gcUAGUUGCUGUCGUUCGUAAuGAUa -5'
14702 5' -45.8 NC_003529.1 + 59931 0.67 0.999776
Target:  5'- cCGAuUCAGCGACAGCAcGUugggAUUGUg -3'
miRNA:   3'- -GCU-AGUUGCUGUCGUuCGuaa-UGAUA- -5'
14702 5' -45.8 NC_003529.1 + 2050 0.68 0.999634
Target:  5'- uCGcAUCAACGACAGCA-GUc--GCUAUa -3'
miRNA:   3'- -GC-UAGUUGCUGUCGUuCGuaaUGAUA- -5'
14702 5' -45.8 NC_003529.1 + 16833 0.68 0.999417
Target:  5'- -uGUCGACG-CAGCGcucGCGUUACUGc -3'
miRNA:   3'- gcUAGUUGCuGUCGUu--CGUAAUGAUa -5'
14702 5' -45.8 NC_003529.1 + 24072 0.68 0.999272
Target:  5'- uGGUCAAUGAUuguAGCAAGUuUUACUu- -3'
miRNA:   3'- gCUAGUUGCUG---UCGUUCGuAAUGAua -5'
14702 5' -45.8 NC_003529.1 + 133357 0.7 0.997581
Target:  5'- gGAUC-ACGACAuGCGAGUguacaaGUUGCUGUu -3'
miRNA:   3'- gCUAGuUGCUGU-CGUUCG------UAAUGAUA- -5'
14702 5' -45.8 NC_003529.1 + 142097 0.7 0.997105
Target:  5'- cCGAUCAAUGuACGcGCAAGCGUUGu--- -3'
miRNA:   3'- -GCUAGUUGC-UGU-CGUUCGUAAUgaua -5'
14702 5' -45.8 NC_003529.1 + 39755 0.7 0.996554
Target:  5'- aGAUCAaacuACGACAGCAA-CAUU-CUGUa -3'
miRNA:   3'- gCUAGU----UGCUGUCGUUcGUAAuGAUA- -5'
14702 5' -45.8 NC_003529.1 + 11068 0.72 0.991159
Target:  5'- aGGUCAACGACaauAGCGAaucGCAUUgGCUAUc -3'
miRNA:   3'- gCUAGUUGCUG---UCGUU---CGUAA-UGAUA- -5'
14702 5' -45.8 NC_003529.1 + 33041 0.74 0.972685
Target:  5'- aCGAUCAcguCGACAGCAAGUAUa----- -3'
miRNA:   3'- -GCUAGUu--GCUGUCGUUCGUAaugaua -5'
14702 5' -45.8 NC_003529.1 + 116475 0.74 0.95881
Target:  5'- gGGUCGACGGCGGCAcuAGCAccACUu- -3'
miRNA:   3'- gCUAGUUGCUGUCGU--UCGUaaUGAua -5'
14702 5' -45.8 NC_003529.1 + 56556 1.06 0.036505
Target:  5'- gCGAUCAACGACAGCAAGCAUUACUAUc -3'
miRNA:   3'- -GCUAGUUGCUGUCGUUCGUAAUGAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.