miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14706 5' -55.1 NC_003529.1 + 123693 0.66 0.903921
Target:  5'- aGCAGCGaugcGCAuuCGUUUUCGCUuugUGGCg -3'
miRNA:   3'- aUGUCGC----CGUcuGUAGAAGCGA---GCCG- -5'
14706 5' -55.1 NC_003529.1 + 3556 0.66 0.903921
Target:  5'- gGCGGCGGCGucGGCAUCguuguuUUCGCU--GCa -3'
miRNA:   3'- aUGUCGCCGU--CUGUAG------AAGCGAgcCG- -5'
14706 5' -55.1 NC_003529.1 + 86915 0.66 0.903921
Target:  5'- cGCAGCGcCAG-UGUCUUCGUcCGGUu -3'
miRNA:   3'- aUGUCGCcGUCuGUAGAAGCGaGCCG- -5'
14706 5' -55.1 NC_003529.1 + 141259 0.67 0.897452
Target:  5'- -uUAGCGGCAGuuCGUCgUCGCUaCuGCu -3'
miRNA:   3'- auGUCGCCGUCu-GUAGaAGCGA-GcCG- -5'
14706 5' -55.1 NC_003529.1 + 142417 0.67 0.886608
Target:  5'- uUGCGGCGGCAGuggcguguccgaucuGCGUCguuUCGauucgCGGUg -3'
miRNA:   3'- -AUGUCGCCGUC---------------UGUAGa--AGCga---GCCG- -5'
14706 5' -55.1 NC_003529.1 + 43079 0.67 0.86924
Target:  5'- cAUAGCGGCAGuuuCAUCgUCGCagUCGa- -3'
miRNA:   3'- aUGUCGCCGUCu--GUAGaAGCG--AGCcg -5'
14706 5' -55.1 NC_003529.1 + 697 0.67 0.86924
Target:  5'- cACGG-GGCAGccACcgCcUCGCUUGGCc -3'
miRNA:   3'- aUGUCgCCGUC--UGuaGaAGCGAGCCG- -5'
14706 5' -55.1 NC_003529.1 + 25453 0.68 0.837535
Target:  5'- cAUAGUGGCcGGCGgguuugccgcuuUCUU-GCUCGGCu -3'
miRNA:   3'- aUGUCGCCGuCUGU------------AGAAgCGAGCCG- -5'
14706 5' -55.1 NC_003529.1 + 77670 0.68 0.837535
Target:  5'- cUAUAuGCGGCGGACAa---CGaCUCGGCc -3'
miRNA:   3'- -AUGU-CGCCGUCUGUagaaGC-GAGCCG- -5'
14706 5' -55.1 NC_003529.1 + 131774 0.71 0.70604
Target:  5'- aGCAGCacgucgucGGCGGGCAcgcguUCUUCGcCUUGGUc -3'
miRNA:   3'- aUGUCG--------CCGUCUGU-----AGAAGC-GAGCCG- -5'
14706 5' -55.1 NC_003529.1 + 72709 1.09 0.003177
Target:  5'- cUACAGCGGCAGACAUCUUCGCUCGGCc -3'
miRNA:   3'- -AUGUCGCCGUCUGUAGAAGCGAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.