miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14708 3' -47 NC_003529.1 + 99168 0.66 0.99992
Target:  5'- aGCUACAuauuuuauauguCGUACGUCACa-AUGAUAa- -3'
miRNA:   3'- -CGAUGU------------GCAUGUAGUGgcUGCUAUaa -5'
14708 3' -47 NC_003529.1 + 148590 0.66 0.999894
Target:  5'- --aGCGCGUACAaggcgUCACCGucuGCGAg--- -3'
miRNA:   3'- cgaUGUGCAUGU-----AGUGGC---UGCUauaa -5'
14708 3' -47 NC_003529.1 + 143454 0.66 0.999894
Target:  5'- uCUGCACGU-CAcCACCGACa----- -3'
miRNA:   3'- cGAUGUGCAuGUaGUGGCUGcuauaa -5'
14708 3' -47 NC_003529.1 + 59243 0.66 0.999862
Target:  5'- cGCgUACugGUGCAg--UCGACGAUGc- -3'
miRNA:   3'- -CG-AUGugCAUGUaguGGCUGCUAUaa -5'
14708 3' -47 NC_003529.1 + 153199 0.66 0.999821
Target:  5'- cGUUGCuugugGCGUACAU-GCCGACGGc--- -3'
miRNA:   3'- -CGAUG-----UGCAUGUAgUGGCUGCUauaa -5'
14708 3' -47 NC_003529.1 + 143409 0.67 0.99977
Target:  5'- uGCgccaACGUAgAUCauGCCGGCGAUGc- -3'
miRNA:   3'- -CGaug-UGCAUgUAG--UGGCUGCUAUaa -5'
14708 3' -47 NC_003529.1 + 147214 0.67 0.99977
Target:  5'- --cACAUGUGCAagaaagaaaUCACUGACGAc--- -3'
miRNA:   3'- cgaUGUGCAUGU---------AGUGGCUGCUauaa -5'
14708 3' -47 NC_003529.1 + 3962 0.67 0.999706
Target:  5'- uUUGCugGUGa--UGCCGGCGAUGUUg -3'
miRNA:   3'- cGAUGugCAUguaGUGGCUGCUAUAA- -5'
14708 3' -47 NC_003529.1 + 97417 0.67 0.999627
Target:  5'- cGUUGCGCaccuugucggguGUACAUCGuuGACGGUc-- -3'
miRNA:   3'- -CGAUGUG------------CAUGUAGUggCUGCUAuaa -5'
14708 3' -47 NC_003529.1 + 20755 0.68 0.999271
Target:  5'- gGCUcgauCGCGUucgGCGUCGCCGACa----- -3'
miRNA:   3'- -CGAu---GUGCA---UGUAGUGGCUGcuauaa -5'
14708 3' -47 NC_003529.1 + 109788 0.68 0.999255
Target:  5'- aGCUGCagaguuuACGUGCA-CACCGACa----- -3'
miRNA:   3'- -CGAUG-------UGCAUGUaGUGGCUGcuauaa -5'
14708 3' -47 NC_003529.1 + 47961 0.68 0.998652
Target:  5'- -aUACACGUACcagcugCACUGugGGUGg- -3'
miRNA:   3'- cgAUGUGCAUGua----GUGGCugCUAUaa -5'
14708 3' -47 NC_003529.1 + 8995 0.68 0.998652
Target:  5'- uGCUAauUGUACGUgACCGACGGc--- -3'
miRNA:   3'- -CGAUguGCAUGUAgUGGCUGCUauaa -5'
14708 3' -47 NC_003529.1 + 32981 0.68 0.998365
Target:  5'- gGCUGgcCGCGUGCGcuuUUGCCGACGGc--- -3'
miRNA:   3'- -CGAU--GUGCAUGU---AGUGGCUGCUauaa -5'
14708 3' -47 NC_003529.1 + 131956 0.69 0.998029
Target:  5'- --aACGCGUGCc-CGCCGACGAc--- -3'
miRNA:   3'- cgaUGUGCAUGuaGUGGCUGCUauaa -5'
14708 3' -47 NC_003529.1 + 36408 0.69 0.996652
Target:  5'- gGCg--GCGUGCAaagCACCGACGAa--- -3'
miRNA:   3'- -CGaugUGCAUGUa--GUGGCUGCUauaa -5'
14708 3' -47 NC_003529.1 + 72313 0.7 0.994564
Target:  5'- aGUUGCACG-ACuaCACCGACGAUc-- -3'
miRNA:   3'- -CGAUGUGCaUGuaGUGGCUGCUAuaa -5'
14708 3' -47 NC_003529.1 + 47627 0.7 0.994564
Target:  5'- --gGCACGUACAUguugaccgauaCACCGAcaCGAUGUa -3'
miRNA:   3'- cgaUGUGCAUGUA-----------GUGGCU--GCUAUAa -5'
14708 3' -47 NC_003529.1 + 67150 0.7 0.993671
Target:  5'- aGCgccgGCAuUGUGCuUCACCGACGAc--- -3'
miRNA:   3'- -CGa---UGU-GCAUGuAGUGGCUGCUauaa -5'
14708 3' -47 NC_003529.1 + 58634 0.7 0.993671
Target:  5'- aGCUAUc--UGCAUCAUCGACGGUGa- -3'
miRNA:   3'- -CGAUGugcAUGUAGUGGCUGCUAUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.