miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14708 5' -48.6 NC_003529.1 + 124066 0.66 0.999392
Target:  5'- gCAAUugUAUCGAcGCACcaaGGgCGa -3'
miRNA:   3'- gGUUAugAUAGCUaCGUGaagCCgGC- -5'
14708 5' -48.6 NC_003529.1 + 77351 0.66 0.999392
Target:  5'- aCUAAUGCgaagcaGGUGgGCgcugUCGGCCa -3'
miRNA:   3'- -GGUUAUGauag--CUACgUGa---AGCCGGc -5'
14708 5' -48.6 NC_003529.1 + 132283 0.66 0.999248
Target:  5'- gCCGGUGCcaccgucUCGAaGCucguaggcaACUUCGGCCa -3'
miRNA:   3'- -GGUUAUGau-----AGCUaCG---------UGAAGCCGGc -5'
14708 5' -48.6 NC_003529.1 + 56441 0.66 0.999248
Target:  5'- gCCGcaACgaucgCGAUGCAg-UCGGCCa -3'
miRNA:   3'- -GGUuaUGaua--GCUACGUgaAGCCGGc -5'
14708 5' -48.6 NC_003529.1 + 59572 0.67 0.998631
Target:  5'- cCCGcgGCaca-GGUGCAg-UCGGCCGg -3'
miRNA:   3'- -GGUuaUGauagCUACGUgaAGCCGGC- -5'
14708 5' -48.6 NC_003529.1 + 146304 0.67 0.998014
Target:  5'- -uGAUGCUcaCGAUGUACacgUUGGCCu -3'
miRNA:   3'- ggUUAUGAuaGCUACGUGa--AGCCGGc -5'
14708 5' -48.6 NC_003529.1 + 152841 0.67 0.9975
Target:  5'- gCCGAcccUACUuuggcuaagauggcGUCGGUGCACauguaCGGCUGg -3'
miRNA:   3'- -GGUU---AUGA--------------UAGCUACGUGaa---GCCGGC- -5'
14708 5' -48.6 NC_003529.1 + 75623 0.68 0.99718
Target:  5'- aCGGuUugUAUCuagGCGCUUUGGCCa -3'
miRNA:   3'- gGUU-AugAUAGcuaCGUGAAGCCGGc -5'
14708 5' -48.6 NC_003529.1 + 101573 0.68 0.996665
Target:  5'- cCCGAcAC-AUCGAacGCGCcgUCGGCCa -3'
miRNA:   3'- -GGUUaUGaUAGCUa-CGUGa-AGCCGGc -5'
14708 5' -48.6 NC_003529.1 + 141830 0.69 0.990489
Target:  5'- gCCAc-AUUGUUG-UGCGCaUCGGCCGg -3'
miRNA:   3'- -GGUuaUGAUAGCuACGUGaAGCCGGC- -5'
14708 5' -48.6 NC_003529.1 + 111023 0.69 0.988553
Target:  5'- aCAAU-CUAUCGAUGCACgcguucaauaugUGGCgCGg -3'
miRNA:   3'- gGUUAuGAUAGCUACGUGaa----------GCCG-GC- -5'
14708 5' -48.6 NC_003529.1 + 98323 0.7 0.987636
Target:  5'- cCCAGU---GUCGGUGCACgccaUCGcGCCa -3'
miRNA:   3'- -GGUUAugaUAGCUACGUGa---AGC-CGGc -5'
14708 5' -48.6 NC_003529.1 + 61398 0.7 0.982169
Target:  5'- gUCAA-ACUA-CGAuaUGCACgugUCGGCCGc -3'
miRNA:   3'- -GGUUaUGAUaGCU--ACGUGa--AGCCGGC- -5'
14708 5' -48.6 NC_003529.1 + 141231 0.73 0.936827
Target:  5'- gCCAGcGCUAUCGgcGCGaugUUUGGCCGc -3'
miRNA:   3'- -GGUUaUGAUAGCuaCGUg--AAGCCGGC- -5'
14708 5' -48.6 NC_003529.1 + 58497 0.8 0.621712
Target:  5'- gCGAUAUgaguaacgGAUGCACUUCGGCCGg -3'
miRNA:   3'- gGUUAUGauag----CUACGUGAAGCCGGC- -5'
14708 5' -48.6 NC_003529.1 + 93978 1.13 0.009891
Target:  5'- cCCAAUACUAUCGAUGCACUUCGGCCGa -3'
miRNA:   3'- -GGUUAUGAUAGCUACGUGAAGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.