miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1471 3' -64.2 NC_001335.1 + 41472 0.66 0.304899
Target:  5'- cGGcaccGGGAAGUCGgcguuCGUCCUCGCCuacGCg -3'
miRNA:   3'- aCC----CCCUUCGGC-----GCGGGAGCGGcu-CG- -5'
1471 3' -64.2 NC_001335.1 + 39317 0.66 0.277285
Target:  5'- cGGGaGGAGGaCGCGCg--UGCCGAGg -3'
miRNA:   3'- aCCC-CCUUCgGCGCGggaGCGGCUCg -5'
1471 3' -64.2 NC_001335.1 + 13696 0.66 0.277285
Target:  5'- gUGGccGGGAAGUa--GCCCUCGUCGGugauGCg -3'
miRNA:   3'- -ACC--CCCUUCGgcgCGGGAGCGGCU----CG- -5'
1471 3' -64.2 NC_001335.1 + 40884 0.66 0.277285
Target:  5'- gGGGGGAAGUCG-GaCC-CGUCGGGa -3'
miRNA:   3'- aCCCCCUUCGGCgCgGGaGCGGCUCg -5'
1471 3' -64.2 NC_001335.1 + 46153 0.66 0.270701
Target:  5'- aGcGGGGAAGCCGaUGCC-UCGgCGAu- -3'
miRNA:   3'- aC-CCCCUUCGGC-GCGGgAGCgGCUcg -5'
1471 3' -64.2 NC_001335.1 + 14981 0.66 0.268751
Target:  5'- aGGGGGAGGCCaggccCGCcaaggaaaccucccCCUCcgggguagacaGCCGGGUg -3'
miRNA:   3'- aCCCCCUUCGGc----GCG--------------GGAG-----------CGGCUCG- -5'
1471 3' -64.2 NC_001335.1 + 13425 0.66 0.264244
Target:  5'- cUGGGccccgaGGAuGCCGUGCuCCUUGgugaaCGAGCg -3'
miRNA:   3'- -ACCC------CCUuCGGCGCG-GGAGCg----GCUCG- -5'
1471 3' -64.2 NC_001335.1 + 7661 0.67 0.233819
Target:  5'- cGGGcGAugAGCaG-GCCCUCGCgGAGCu -3'
miRNA:   3'- aCCCcCU--UCGgCgCGGGAGCGgCUCG- -5'
1471 3' -64.2 NC_001335.1 + 1366 0.68 0.215392
Target:  5'- gUGGGGGGcaccgggguguuggGGCUGCuGCCaC-CGCCGccGGCu -3'
miRNA:   3'- -ACCCCCU--------------UCGGCG-CGG-GaGCGGC--UCG- -5'
1471 3' -64.2 NC_001335.1 + 9597 0.68 0.211646
Target:  5'- cGGGGGAAcGUCGcCGCCCUUcaugauCCGguaGGCg -3'
miRNA:   3'- aCCCCCUU-CGGC-GCGGGAGc-----GGC---UCG- -5'
1471 3' -64.2 NC_001335.1 + 16374 0.68 0.205874
Target:  5'- cGGGGcagcgucGAGGCgGCuGCCUUgaugccguccaUGCCGAGCg -3'
miRNA:   3'- aCCCC-------CUUCGgCG-CGGGA-----------GCGGCUCG- -5'
1471 3' -64.2 NC_001335.1 + 26087 0.68 0.201254
Target:  5'- gUGGGGGuAGGCgUGUGCCacgUUGCCG-GCc -3'
miRNA:   3'- -ACCCCC-UUCG-GCGCGGg--AGCGGCuCG- -5'
1471 3' -64.2 NC_001335.1 + 51094 0.68 0.201254
Target:  5'- aGGGGuGAAcuauGCCa-GUCUUCGCUGAGCa -3'
miRNA:   3'- aCCCC-CUU----CGGcgCGGGAGCGGCUCG- -5'
1471 3' -64.2 NC_001335.1 + 3191 0.69 0.177198
Target:  5'- cGGGGGAccaucAGCuCcCGCCgCUCGCCuuGGCg -3'
miRNA:   3'- aCCCCCU-----UCG-GcGCGG-GAGCGGc-UCG- -5'
1471 3' -64.2 NC_001335.1 + 1723 0.69 0.17226
Target:  5'- cGGGGGAAccuuGCCugcgccgaaccagGCGUCCUCGaggaGGGCg -3'
miRNA:   3'- aCCCCCUU----CGG-------------CGCGGGAGCgg--CUCG- -5'
1471 3' -64.2 NC_001335.1 + 20633 0.69 0.168312
Target:  5'- aGGcGGGAGGUCaauCGCUCcaccgaccgCGCCGAGCg -3'
miRNA:   3'- aCC-CCCUUCGGc--GCGGGa--------GCGGCUCG- -5'
1471 3' -64.2 NC_001335.1 + 49231 0.71 0.136646
Target:  5'- --cGGGuuGCCGCGCCagucgUCGCgGAGCc -3'
miRNA:   3'- accCCCuuCGGCGCGGg----AGCGgCUCG- -5'
1471 3' -64.2 NC_001335.1 + 22297 0.71 0.119732
Target:  5'- cUGGGGGAucucGCCGaUGaCCUCGgCCGGGUu -3'
miRNA:   3'- -ACCCCCUu---CGGC-GCgGGAGC-GGCUCG- -5'
1471 3' -64.2 NC_001335.1 + 15341 1.1 0.000117
Target:  5'- cUGGGGGAAGCCGCGCCCUCGCCGAGCu -3'
miRNA:   3'- -ACCCCCUUCGGCGCGGGAGCGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.