miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14710 5' -51.9 NC_003529.1 + 12587 0.66 0.98297
Target:  5'- cGGCuguGCGcCGAGUGUauAGCGuCGUCGCc -3'
miRNA:   3'- -CUGuuuCGC-GUUCACA--UCGU-GCGGUG- -5'
14710 5' -51.9 NC_003529.1 + 14422 0.66 0.98086
Target:  5'- uGCAuuuuGUGCAAGUG-AGCACGUUg- -3'
miRNA:   3'- cUGUuu--CGCGUUCACaUCGUGCGGug -5'
14710 5' -51.9 NC_003529.1 + 82751 0.66 0.98086
Target:  5'- uGCAGuuuGGCGCGuauauagaAGUGUacgaucugAGCACGCCcGCu -3'
miRNA:   3'- cUGUU---UCGCGU--------UCACA--------UCGUGCGG-UG- -5'
14710 5' -51.9 NC_003529.1 + 76207 0.67 0.970442
Target:  5'- aGCAAuggacGGCGCAGGaGcAGCagcggGCGCCGCa -3'
miRNA:   3'- cUGUU-----UCGCGUUCaCaUCG-----UGCGGUG- -5'
14710 5' -51.9 NC_003529.1 + 137358 0.67 0.960328
Target:  5'- uGAUAAGGCcguGCuuuUGUGcGCGCGCCGCu -3'
miRNA:   3'- -CUGUUUCG---CGuucACAU-CGUGCGGUG- -5'
14710 5' -51.9 NC_003529.1 + 49857 0.68 0.952389
Target:  5'- --gGAAGaaauauuGCGAGUagAGCGCGCCACg -3'
miRNA:   3'- cugUUUCg------CGUUCAcaUCGUGCGGUG- -5'
14710 5' -51.9 NC_003529.1 + 44275 0.68 0.943448
Target:  5'- -cCAAuGGCuGCGAaacGUGUuGCGCGCCACa -3'
miRNA:   3'- cuGUU-UCG-CGUU---CACAuCGUGCGGUG- -5'
14710 5' -51.9 NC_003529.1 + 69762 0.68 0.938593
Target:  5'- aACAAcGCGCGAuGUGUGGUauugguGCGCgACa -3'
miRNA:   3'- cUGUUuCGCGUU-CACAUCG------UGCGgUG- -5'
14710 5' -51.9 NC_003529.1 + 98313 0.69 0.897321
Target:  5'- uGCAAuuGCGCccAGUGUcgguGCACGCCAUc -3'
miRNA:   3'- cUGUUu-CGCGu-UCACAu---CGUGCGGUG- -5'
14710 5' -51.9 NC_003529.1 + 49626 0.7 0.868152
Target:  5'- aGACAAAGUccuCGAGUGUGGCAUGUuuuuauCGCa -3'
miRNA:   3'- -CUGUUUCGc--GUUCACAUCGUGCG------GUG- -5'
14710 5' -51.9 NC_003529.1 + 126482 1.1 0.004624
Target:  5'- gGACAAAGCGCAAGUGUAGCACGCCACa -3'
miRNA:   3'- -CUGUUUCGCGUUCACAUCGUGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.