Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14713 | 3' | -53 | NC_003529.1 | + | 8763 | 0.72 | 0.746226 |
Target: 5'- cGCGguuCGCC-GCCGACUACGCGCGc--- -3' miRNA: 3'- -CGU---GCGGcCGGUUGAUGUGCGUuugu -5' |
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14713 | 3' | -53 | NC_003529.1 | + | 17008 | 0.66 | 0.97801 |
Target: 5'- aCGCGCCGaGUauaAACUGaaGCGCAAGCc -3' miRNA: 3'- cGUGCGGC-CGg--UUGAUg-UGCGUUUGu -5' |
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14713 | 3' | -53 | NC_003529.1 | + | 21664 | 0.69 | 0.894517 |
Target: 5'- gGCACGCCGGgcacuuucgcccaccCCAucgucaacaucaACgcaaGCACGCAAAUAu -3' miRNA: 3'- -CGUGCGGCC---------------GGU------------UGa---UGUGCGUUUGU- -5' |
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14713 | 3' | -53 | NC_003529.1 | + | 24006 | 0.66 | 0.969654 |
Target: 5'- uGCACGUagcguuCGGCCAccaacuuGCUGguguuccauCugGCAGGCAg -3' miRNA: 3'- -CGUGCG------GCCGGU-------UGAU---------GugCGUUUGU- -5' |
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14713 | 3' | -53 | NC_003529.1 | + | 24840 | 0.67 | 0.943436 |
Target: 5'- aCACGUCGGUCA---ACACGCAGu-- -3' miRNA: 3'- cGUGCGGCCGGUugaUGUGCGUUugu -5' |
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14713 | 3' | -53 | NC_003529.1 | + | 25056 | 0.72 | 0.746226 |
Target: 5'- -gACGUCGGCCAcUUGCGCGCccAGCGg -3' miRNA: 3'- cgUGCGGCCGGUuGAUGUGCGu-UUGU- -5' |
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14713 | 3' | -53 | NC_003529.1 | + | 29576 | 0.69 | 0.884839 |
Target: 5'- uUACGuuGGCaCAGCagcugUugGCGCAAGCGc -3' miRNA: 3'- cGUGCggCCG-GUUG-----AugUGCGUUUGU- -5' |
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14713 | 3' | -53 | NC_003529.1 | + | 30753 | 0.7 | 0.838359 |
Target: 5'- cCGCGCCaagGGCUAcGCUACAUcgGCAAGCGa -3' miRNA: 3'- cGUGCGG---CCGGU-UGAUGUG--CGUUUGU- -5' |
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14713 | 3' | -53 | NC_003529.1 | + | 32158 | 0.71 | 0.821224 |
Target: 5'- gGCGaucCGCCa-CCGugUACACGCAAGCGc -3' miRNA: 3'- -CGU---GCGGccGGUugAUGUGCGUUUGU- -5' |
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14713 | 3' | -53 | NC_003529.1 | + | 43127 | 0.68 | 0.9337 |
Target: 5'- aCACGCCGccCCAACaugGCGCGUuAACAu -3' miRNA: 3'- cGUGCGGCc-GGUUGa--UGUGCGuUUGU- -5' |
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14713 | 3' | -53 | NC_003529.1 | + | 43304 | 0.67 | 0.943436 |
Target: 5'- aCGCGCCauguugGGgCGGCUGUACGUAAACGa -3' miRNA: 3'- cGUGCGG------CCgGUUGAUGUGCGUUUGU- -5' |
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14713 | 3' | -53 | NC_003529.1 | + | 44214 | 0.67 | 0.956203 |
Target: 5'- aGCACGUugCGGCUAACUugACcCGGcGCAa -3' miRNA: 3'- -CGUGCG--GCCGGUUGAugUGcGUU-UGU- -5' |
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14713 | 3' | -53 | NC_003529.1 | + | 52181 | 0.66 | 0.966852 |
Target: 5'- aCGCGCCgaGGCUuGCUuCugGCGAAUg -3' miRNA: 3'- cGUGCGG--CCGGuUGAuGugCGUUUGu -5' |
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14713 | 3' | -53 | NC_003529.1 | + | 53705 | 0.71 | 0.812383 |
Target: 5'- uGCACGCCGGUCcGCUacgaACugGaUAAACu -3' miRNA: 3'- -CGUGCGGCCGGuUGA----UGugC-GUUUGu -5' |
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14713 | 3' | -53 | NC_003529.1 | + | 56256 | 0.74 | 0.654118 |
Target: 5'- --uUGCUGGCCGACUGCAuCGCGAuCGu -3' miRNA: 3'- cguGCGGCCGGUUGAUGU-GCGUUuGU- -5' |
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14713 | 3' | -53 | NC_003529.1 | + | 56425 | 0.68 | 0.922969 |
Target: 5'- uGCA-GUCGGCCAGCaACGaugaaGCGAAUAa -3' miRNA: 3'- -CGUgCGGCCGGUUGaUGUg----CGUUUGU- -5' |
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14713 | 3' | -53 | NC_003529.1 | + | 59382 | 0.68 | 0.938204 |
Target: 5'- gGCAauuuaGuCCGGCCGACUGCAccugugcCGCGggUu -3' miRNA: 3'- -CGUg----C-GGCCGGUUGAUGU-------GCGUuuGu -5' |
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14713 | 3' | -53 | NC_003529.1 | + | 59721 | 0.66 | 0.97801 |
Target: 5'- gGCACGaCGGaucaCCAA--AUACGCAAACAu -3' miRNA: 3'- -CGUGCgGCC----GGUUgaUGUGCGUUUGU- -5' |
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14713 | 3' | -53 | NC_003529.1 | + | 68076 | 0.69 | 0.905003 |
Target: 5'- gGCGCGaCUGGUccguCAGCaACACGCuAGACAg -3' miRNA: 3'- -CGUGC-GGCCG----GUUGaUGUGCG-UUUGU- -5' |
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14713 | 3' | -53 | NC_003529.1 | + | 77333 | 0.68 | 0.917228 |
Target: 5'- gGCGCuGUCGGCCAGC-ACAaGCAcauGGCGg -3' miRNA: 3'- -CGUG-CGGCCGGUUGaUGUgCGU---UUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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