Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14716 | 3' | -50.4 | NC_003529.1 | + | 86953 | 0.66 | 0.995106 |
Target: 5'- aGGCAacaagGCGGUCGGCaaCAAUUGu -3' miRNA: 3'- cCCGUauuaaCGCUAGCCGg-GUUAGC- -5' |
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14716 | 3' | -50.4 | NC_003529.1 | + | 20609 | 0.67 | 0.991275 |
Target: 5'- aGGUAUuuUUGCGcuUCGGUgUAAUCGa -3' miRNA: 3'- cCCGUAuuAACGCu-AGCCGgGUUAGC- -5' |
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14716 | 3' | -50.4 | NC_003529.1 | + | 129564 | 0.67 | 0.988626 |
Target: 5'- cGGCGUGGUggUGUccaacgucaaGAUCGGCUgGAUCu -3' miRNA: 3'- cCCGUAUUA--ACG----------CUAGCCGGgUUAGc -5' |
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14716 | 3' | -50.4 | NC_003529.1 | + | 94001 | 0.68 | 0.981496 |
Target: 5'- cGGGCAgAAUguagucgucggGuCGAUCGGCaCAAUCGu -3' miRNA: 3'- -CCCGUaUUAa----------C-GCUAGCCGgGUUAGC- -5' |
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14716 | 3' | -50.4 | NC_003529.1 | + | 68759 | 0.7 | 0.961687 |
Target: 5'- cGGCAccGUgggGCGAUCGuaCCGAUUGg -3' miRNA: 3'- cCCGUauUAa--CGCUAGCcgGGUUAGC- -5' |
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14716 | 3' | -50.4 | NC_003529.1 | + | 153673 | 0.71 | 0.930535 |
Target: 5'- cGGGCAUuuGAUcGCGAaaCGGCCCuuGUCu -3' miRNA: 3'- -CCCGUA--UUAaCGCUa-GCCGGGu-UAGc -5' |
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14716 | 3' | -50.4 | NC_003529.1 | + | 69637 | 0.72 | 0.907173 |
Target: 5'- cGGGCGUGAUggcgaugcaugUGCGGUUGGCggAGUUGa -3' miRNA: 3'- -CCCGUAUUA-----------ACGCUAGCCGggUUAGC- -5' |
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14716 | 3' | -50.4 | NC_003529.1 | + | 21631 | 1.13 | 0.00614 |
Target: 5'- aGGGCAUAAUUGCGAUCGGCCCAAUCGa -3' miRNA: 3'- -CCCGUAUUAACGCUAGCCGGGUUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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