miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14716 3' -50.4 NC_003529.1 + 86953 0.66 0.995106
Target:  5'- aGGCAacaagGCGGUCGGCaaCAAUUGu -3'
miRNA:   3'- cCCGUauuaaCGCUAGCCGg-GUUAGC- -5'
14716 3' -50.4 NC_003529.1 + 20609 0.67 0.991275
Target:  5'- aGGUAUuuUUGCGcuUCGGUgUAAUCGa -3'
miRNA:   3'- cCCGUAuuAACGCu-AGCCGgGUUAGC- -5'
14716 3' -50.4 NC_003529.1 + 129564 0.67 0.988626
Target:  5'- cGGCGUGGUggUGUccaacgucaaGAUCGGCUgGAUCu -3'
miRNA:   3'- cCCGUAUUA--ACG----------CUAGCCGGgUUAGc -5'
14716 3' -50.4 NC_003529.1 + 94001 0.68 0.981496
Target:  5'- cGGGCAgAAUguagucgucggGuCGAUCGGCaCAAUCGu -3'
miRNA:   3'- -CCCGUaUUAa----------C-GCUAGCCGgGUUAGC- -5'
14716 3' -50.4 NC_003529.1 + 68759 0.7 0.961687
Target:  5'- cGGCAccGUgggGCGAUCGuaCCGAUUGg -3'
miRNA:   3'- cCCGUauUAa--CGCUAGCcgGGUUAGC- -5'
14716 3' -50.4 NC_003529.1 + 153673 0.71 0.930535
Target:  5'- cGGGCAUuuGAUcGCGAaaCGGCCCuuGUCu -3'
miRNA:   3'- -CCCGUA--UUAaCGCUa-GCCGGGu-UAGc -5'
14716 3' -50.4 NC_003529.1 + 69637 0.72 0.907173
Target:  5'- cGGGCGUGAUggcgaugcaugUGCGGUUGGCggAGUUGa -3'
miRNA:   3'- -CCCGUAUUA-----------ACGCUAGCCGggUUAGC- -5'
14716 3' -50.4 NC_003529.1 + 21631 1.13 0.00614
Target:  5'- aGGGCAUAAUUGCGAUCGGCCCAAUCGa -3'
miRNA:   3'- -CCCGUAUUAACGCUAGCCGGGUUAGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.