Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14716 | 5' | -61.2 | NC_003529.1 | + | 44501 | 0.66 | 0.64972 |
Target: 5'- -uCGCCGGGCACaaugUgGCgCACUCUg -3' miRNA: 3'- guGCGGCCCGUGaa--AgCGgGUGGGGu -5' |
|||||||
14716 | 5' | -61.2 | NC_003529.1 | + | 110121 | 0.68 | 0.54169 |
Target: 5'- gACaGCCGGGCACUUgcauacauUCCACCUCGa -3' miRNA: 3'- gUG-CGGCCCGUGAAagc-----GGGUGGGGU- -5' |
|||||||
14716 | 5' | -61.2 | NC_003529.1 | + | 121728 | 0.69 | 0.475986 |
Target: 5'- aCGCGCCcGGuCACguaaugUGCCCGCCUCGa -3' miRNA: 3'- -GUGCGGcCC-GUGaaa---GCGGGUGGGGU- -5' |
|||||||
14716 | 5' | -61.2 | NC_003529.1 | + | 128876 | 0.72 | 0.365837 |
Target: 5'- aACGUCGcGGCACaggaaaaacuUUUUGCCCGCCaCCGu -3' miRNA: 3'- gUGCGGC-CCGUG----------AAAGCGGGUGG-GGU- -5' |
|||||||
14716 | 5' | -61.2 | NC_003529.1 | + | 21665 | 1.07 | 0.001288 |
Target: 5'- gCACGCCGGGCACUUUCGCCCACCCCAu -3' miRNA: 3'- -GUGCGGCCCGUGAAAGCGGGUGGGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home