Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14717 | 5' | -44.7 | NC_003529.1 | + | 113443 | 0.66 | 0.999991 |
Target: 5'- -uGGCGCugcacgaguaucaaGACAACgGCGAAGUUUa -3' miRNA: 3'- uuUCGCGua------------CUGUUGgCGUUUUAAAa -5' |
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14717 | 5' | -44.7 | NC_003529.1 | + | 116015 | 0.66 | 0.999991 |
Target: 5'- aGAAGgGCGUGAUggUgCGCGAGAa--- -3' miRNA: 3'- -UUUCgCGUACUGuuG-GCGUUUUaaaa -5' |
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14717 | 5' | -44.7 | NC_003529.1 | + | 2135 | 0.66 | 0.999991 |
Target: 5'- --uGCGCAcgGACAcGCCGCAGc----- -3' miRNA: 3'- uuuCGCGUa-CUGU-UGGCGUUuuaaaa -5' |
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14717 | 5' | -44.7 | NC_003529.1 | + | 76222 | 0.66 | 0.999987 |
Target: 5'- aGGAGCaGCAgcgGGCG-CCGCAGGAg--- -3' miRNA: 3'- -UUUCG-CGUa--CUGUuGGCGUUUUaaaa -5' |
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14717 | 5' | -44.7 | NC_003529.1 | + | 106055 | 0.66 | 0.999974 |
Target: 5'- cGGAGUGCAcaGCGACCGCAu------ -3' miRNA: 3'- -UUUCGCGUacUGUUGGCGUuuuaaaa -5' |
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14717 | 5' | -44.7 | NC_003529.1 | + | 109777 | 0.67 | 0.999964 |
Target: 5'- -uAGCcCAUaACAGCUGCAGAGUUUa -3' miRNA: 3'- uuUCGcGUAcUGUUGGCGUUUUAAAa -5' |
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14717 | 5' | -44.7 | NC_003529.1 | + | 21960 | 0.67 | 0.999933 |
Target: 5'- -cGGCGUAUGGCGugAUCGCGGAc---- -3' miRNA: 3'- uuUCGCGUACUGU--UGGCGUUUuaaaa -5' |
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14717 | 5' | -44.7 | NC_003529.1 | + | 17349 | 0.68 | 0.999843 |
Target: 5'- --cGUGCuUGACGACaCGCAAAAa--- -3' miRNA: 3'- uuuCGCGuACUGUUG-GCGUUUUaaaa -5' |
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14717 | 5' | -44.7 | NC_003529.1 | + | 38609 | 0.68 | 0.999794 |
Target: 5'- uGGGCGCAUGucgaAACCGCucGAUa-- -3' miRNA: 3'- uUUCGCGUACug--UUGGCGuuUUAaaa -5' |
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14717 | 5' | -44.7 | NC_003529.1 | + | 111803 | 0.69 | 0.999562 |
Target: 5'- --uGUGUAUGugAGCUGCGAAAg--- -3' miRNA: 3'- uuuCGCGUACugUUGGCGUUUUaaaa -5' |
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14717 | 5' | -44.7 | NC_003529.1 | + | 141476 | 0.7 | 0.998364 |
Target: 5'- ---uCGCGUGACGGCCGCcGAAa--- -3' miRNA: 3'- uuucGCGUACUGUUGGCGuUUUaaaa -5' |
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14717 | 5' | -44.7 | NC_003529.1 | + | 30077 | 0.72 | 0.994255 |
Target: 5'- cGGAGCGUuacGACGugCGCAAAGUg-- -3' miRNA: 3'- -UUUCGCGua-CUGUugGCGUUUUAaaa -5' |
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14717 | 5' | -44.7 | NC_003529.1 | + | 8568 | 0.75 | 0.95214 |
Target: 5'- uGAGGCGCA-GGCGACCGCGc------ -3' miRNA: 3'- -UUUCGCGUaCUGUUGGCGUuuuaaaa -5' |
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14717 | 5' | -44.7 | NC_003529.1 | + | 21813 | 1.04 | 0.051764 |
Target: 5'- aAAAGCGCAUGACAACCGCAAAAUUUUa -3' miRNA: 3'- -UUUCGCGUACUGUUGGCGUUUUAAAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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