miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14719 5' -44.2 NC_003529.1 + 140033 0.66 1
Target:  5'- uGACAUgGGCAUUAUUag-CUaUGUCGAa -3'
miRNA:   3'- gCUGUA-CUGUAAUAGcuaGA-ACAGCU- -5'
14719 5' -44.2 NC_003529.1 + 129292 0.66 1
Target:  5'- gGACAUgaguuggGACAcgUGUCGAUCUUGa--- -3'
miRNA:   3'- gCUGUA-------CUGUa-AUAGCUAGAACagcu -5'
14719 5' -44.2 NC_003529.1 + 108131 0.66 1
Target:  5'- aGACAUGACGUUuUCGAgggccaUUUUGUa-- -3'
miRNA:   3'- gCUGUACUGUAAuAGCU------AGAACAgcu -5'
14719 5' -44.2 NC_003529.1 + 114543 0.66 1
Target:  5'- gCGACAcaaACGccaAUCGAuUCUUGUCGAa -3'
miRNA:   3'- -GCUGUac-UGUaa-UAGCU-AGAACAGCU- -5'
14719 5' -44.2 NC_003529.1 + 115847 0.66 1
Target:  5'- gCGAC-UGGCAgaAUCGAUCgcg-CGAa -3'
miRNA:   3'- -GCUGuACUGUaaUAGCUAGaacaGCU- -5'
14719 5' -44.2 NC_003529.1 + 104113 0.66 1
Target:  5'- aGGCAUGACGguggCGG-CU-GUCGAu -3'
miRNA:   3'- gCUGUACUGUaauaGCUaGAaCAGCU- -5'
14719 5' -44.2 NC_003529.1 + 50875 0.66 1
Target:  5'- aGAUuguUGACAUUGgccCGAUCaucGUCGAc -3'
miRNA:   3'- gCUGu--ACUGUAAUa--GCUAGaa-CAGCU- -5'
14719 5' -44.2 NC_003529.1 + 31026 0.67 0.999998
Target:  5'- cCGACAUGACAaagaaCGAagUUGUCa- -3'
miRNA:   3'- -GCUGUACUGUaaua-GCUagAACAGcu -5'
14719 5' -44.2 NC_003529.1 + 62693 0.67 0.999997
Target:  5'- gCGACAUGAUGUaacguUCGAUCUcuucuUGUUGc -3'
miRNA:   3'- -GCUGUACUGUAau---AGCUAGA-----ACAGCu -5'
14719 5' -44.2 NC_003529.1 + 23383 0.67 0.999996
Target:  5'- uCGACAcgGACGaUAUgGAUCguauugaUGUCGAg -3'
miRNA:   3'- -GCUGUa-CUGUaAUAgCUAGa------ACAGCU- -5'
14719 5' -44.2 NC_003529.1 + 146143 0.68 0.999994
Target:  5'- aCGGCuccccccGUGACggUGUUGAcUUUUGUCGAu -3'
miRNA:   3'- -GCUG-------UACUGuaAUAGCU-AGAACAGCU- -5'
14719 5' -44.2 NC_003529.1 + 140462 0.69 0.999977
Target:  5'- aGACGcGGCGUaGUCGAgUUUGUUGAg -3'
miRNA:   3'- gCUGUaCUGUAaUAGCUaGAACAGCU- -5'
14719 5' -44.2 NC_003529.1 + 132910 0.71 0.999424
Target:  5'- uCGuCGUcGuCGUUAUUGAUCUUGUCGu -3'
miRNA:   3'- -GCuGUA-CuGUAAUAGCUAGAACAGCu -5'
14719 5' -44.2 NC_003529.1 + 100789 0.73 0.997128
Target:  5'- gCGAUGUaugcugaGGCAUUGUCGGUCUUGUUc- -3'
miRNA:   3'- -GCUGUA-------CUGUAAUAGCUAGAACAGcu -5'
14719 5' -44.2 NC_003529.1 + 135042 0.76 0.976405
Target:  5'- uGACAUGAUcgUGUCGAUUcUGUCc- -3'
miRNA:   3'- gCUGUACUGuaAUAGCUAGaACAGcu -5'
14719 5' -44.2 NC_003529.1 + 58176 1.12 0.033503
Target:  5'- aCGACAUGACAUUAUCGAUCUUGUCGAu -3'
miRNA:   3'- -GCUGUACUGUAAUAGCUAGAACAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.