miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1472 5' -57.4 NC_001335.1 + 36116 0.66 0.613471
Target:  5'- cGGCGGUCGAGGUgucgaGUgacCUCCUCc -3'
miRNA:   3'- uCUGCCAGUUCCGg----CGacaGAGGAGc -5'
1472 5' -57.4 NC_001335.1 + 26675 0.66 0.602614
Target:  5'- cGACGGccggcUCAAGGCCGU--UCggCUCGg -3'
miRNA:   3'- uCUGCC-----AGUUCCGGCGacAGagGAGC- -5'
1472 5' -57.4 NC_001335.1 + 32909 0.66 0.570226
Target:  5'- cGACGGcCucGGCUGCUGUgCgcgaCUCGa -3'
miRNA:   3'- uCUGCCaGuuCCGGCGACA-Gag--GAGC- -5'
1472 5' -57.4 NC_001335.1 + 9418 0.67 0.506971
Target:  5'- gAGGCGaUCAGGGCCGCUGagagCcgaCUCa -3'
miRNA:   3'- -UCUGCcAGUUCCGGCGACa---Gag-GAGc -5'
1472 5' -57.4 NC_001335.1 + 30470 0.67 0.506971
Target:  5'- gAGGCGGaaUCcAGGUgGCUGaggccaUCUCCUUGa -3'
miRNA:   3'- -UCUGCC--AGuUCCGgCGAC------AGAGGAGC- -5'
1472 5' -57.4 NC_001335.1 + 26637 0.68 0.434399
Target:  5'- cGGACGGUCuuggugcugacaccGAGGUagucaGCgGUCUCCUgGa -3'
miRNA:   3'- -UCUGCCAG--------------UUCCGg----CGaCAGAGGAgC- -5'
1472 5' -57.4 NC_001335.1 + 12083 0.69 0.409114
Target:  5'- gAGGCGGaacGGGCUGU--UCUCCUCGg -3'
miRNA:   3'- -UCUGCCaguUCCGGCGacAGAGGAGC- -5'
1472 5' -57.4 NC_001335.1 + 12616 0.69 0.399984
Target:  5'- cGGCGGUCGcguAGGCCaCggGUuaCUCCUCGu -3'
miRNA:   3'- uCUGCCAGU---UCCGGcGa-CA--GAGGAGC- -5'
1472 5' -57.4 NC_001335.1 + 11272 0.7 0.382121
Target:  5'- gAGGCcaUCAAGGCCGCUGUCgggaUCa -3'
miRNA:   3'- -UCUGccAGUUCCGGCGACAGagg-AGc -5'
1472 5' -57.4 NC_001335.1 + 4910 0.75 0.179847
Target:  5'- uGAuCGG-CAAGGCCGCUGgcccgCCUCGg -3'
miRNA:   3'- uCU-GCCaGUUCCGGCGACaga--GGAGC- -5'
1472 5' -57.4 NC_001335.1 + 39659 0.79 0.095545
Target:  5'- gAGAUGGUCAGGGCCGgugcggacauCUGUCUggcguucccCCUCGg -3'
miRNA:   3'- -UCUGCCAGUUCCGGC----------GACAGA---------GGAGC- -5'
1472 5' -57.4 NC_001335.1 + 16330 1.09 0.000585
Target:  5'- gAGACGGUCAAGGCCGCUGUCUCCUCGa -3'
miRNA:   3'- -UCUGCCAGUUCCGGCGACAGAGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.