miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14721 5' -55.4 NC_003529.1 + 143409 0.66 0.914945
Target:  5'- -cUGCGCCg---CGGCAUGUcGGUGUa -3'
miRNA:   3'- caGCGCGGaacaGCUGUGCAaCCGCG- -5'
14721 5' -55.4 NC_003529.1 + 79206 0.67 0.889806
Target:  5'- --aGUGCCaUUGgUGAguUGUUGGCGCa -3'
miRNA:   3'- cagCGCGG-AACaGCUguGCAACCGCG- -5'
14721 5' -55.4 NC_003529.1 + 68929 0.67 0.882949
Target:  5'- aUCGCcCCacggUGcCGaAUGCGUUGGCGCc -3'
miRNA:   3'- cAGCGcGGa---ACaGC-UGUGCAACCGCG- -5'
14721 5' -55.4 NC_003529.1 + 100447 0.68 0.872978
Target:  5'- gGUCGCGUacacguguuugGUCaGCACGacgUGGCGCc -3'
miRNA:   3'- -CAGCGCGgaa--------CAGcUGUGCa--ACCGCG- -5'
14721 5' -55.4 NC_003529.1 + 110056 0.68 0.861069
Target:  5'- ---aUGCCUucggcggaguaUGUCGACACGUcGGuCGCg -3'
miRNA:   3'- cagcGCGGA-----------ACAGCUGUGCAaCC-GCG- -5'
14721 5' -55.4 NC_003529.1 + 98317 0.68 0.858777
Target:  5'- aUUGCGCCcagUGUCGguGCACGccaucgcgccauaaUUGGCGg -3'
miRNA:   3'- cAGCGCGGa--ACAGC--UGUGC--------------AACCGCg -5'
14721 5' -55.4 NC_003529.1 + 91754 0.69 0.820583
Target:  5'- gGUUGCuGUaCUUG-CGACAUG-UGGCGCa -3'
miRNA:   3'- -CAGCG-CG-GAACaGCUGUGCaACCGCG- -5'
14721 5' -55.4 NC_003529.1 + 3865 0.69 0.794189
Target:  5'- aUC-CGCUUggggugaGUCGACuuGCGUUGGUGCg -3'
miRNA:   3'- cAGcGCGGAa------CAGCUG--UGCAACCGCG- -5'
14721 5' -55.4 NC_003529.1 + 46360 0.71 0.71806
Target:  5'- uGUCGCGCaCUUGguccCGAUGCGUcgguagGGCGg -3'
miRNA:   3'- -CAGCGCG-GAACa---GCUGUGCAa-----CCGCg -5'
14721 5' -55.4 NC_003529.1 + 36443 0.72 0.677945
Target:  5'- gGUCGUGCCgaugGUCGGCAUGccaaugaugGGCGa -3'
miRNA:   3'- -CAGCGCGGaa--CAGCUGUGCaa-------CCGCg -5'
14721 5' -55.4 NC_003529.1 + 68096 0.72 0.63723
Target:  5'- -gUGCGCCaacgUGUCGACAa---GGCGCg -3'
miRNA:   3'- caGCGCGGa---ACAGCUGUgcaaCCGCG- -5'
14721 5' -55.4 NC_003529.1 + 58434 0.72 0.63723
Target:  5'- -gCGCGCCUaacgcugcggUG-CGACACGUcGGCGa -3'
miRNA:   3'- caGCGCGGA----------ACaGCUGUGCAaCCGCg -5'
14721 5' -55.4 NC_003529.1 + 126706 0.73 0.596446
Target:  5'- -cCGCGC----UCGACAUGUUGGUGCu -3'
miRNA:   3'- caGCGCGgaacAGCUGUGCAACCGCG- -5'
14721 5' -55.4 NC_003529.1 + 69928 0.73 0.576182
Target:  5'- aUCGCGCgUUGuUUGugAUG-UGGCGCa -3'
miRNA:   3'- cAGCGCGgAAC-AGCugUGCaACCGCG- -5'
14721 5' -55.4 NC_003529.1 + 56243 0.74 0.553076
Target:  5'- -cCGCGCUcauUUGUCGACuucaagugugauaaGCGgcGGCGCa -3'
miRNA:   3'- caGCGCGG---AACAGCUG--------------UGCaaCCGCG- -5'
14721 5' -55.4 NC_003529.1 + 126281 0.76 0.432287
Target:  5'- uUUGUGCCUUG-CgGACACGUugUGGCGUg -3'
miRNA:   3'- cAGCGCGGAACaG-CUGUGCA--ACCGCG- -5'
14721 5' -55.4 NC_003529.1 + 67913 1.12 0.002137
Target:  5'- aGUCGCGCCUUGUCGACACGUUGGCGCa -3'
miRNA:   3'- -CAGCGCGGAACAGCUGUGCAACCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.