miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14722 3' -51.8 NC_003529.1 + 142152 0.66 0.982448
Target:  5'- aCUUUuggcGGCGAGc-CACAgAGCGUACUg -3'
miRNA:   3'- cGAAA----UCGCUCacGUGUgUCGCGUGG- -5'
14722 3' -51.8 NC_003529.1 + 137583 0.66 0.980978
Target:  5'- aGCUgaucuGCGucgugguAGUGCACuguacugucguaagaGCGGCGCGCg -3'
miRNA:   3'- -CGAaau--CGC-------UCACGUG---------------UGUCGCGUGg -5'
14722 3' -51.8 NC_003529.1 + 85695 0.66 0.980321
Target:  5'- uUUUUAGUGAGcGUAUACuuGGCGCugUc -3'
miRNA:   3'- cGAAAUCGCUCaCGUGUG--UCGCGugG- -5'
14722 3' -51.8 NC_003529.1 + 43995 0.66 0.980321
Target:  5'- aGCcaagUGGCGGGcagacagcaUGCACAgCAGauuGCGCCg -3'
miRNA:   3'- -CGaa--AUCGCUC---------ACGUGU-GUCg--CGUGG- -5'
14722 3' -51.8 NC_003529.1 + 43830 0.67 0.975498
Target:  5'- -----uGCGguAGUGCACugAGCgGCACg -3'
miRNA:   3'- cgaaauCGC--UCACGUGugUCG-CGUGg -5'
14722 3' -51.8 NC_003529.1 + 74261 0.67 0.972787
Target:  5'- aCUcgAGCGAcUGCuuuGCAUguuGCGCACCa -3'
miRNA:   3'- cGAaaUCGCUcACG---UGUGu--CGCGUGG- -5'
14722 3' -51.8 NC_003529.1 + 98319 0.67 0.969865
Target:  5'- uGCgcccAGUGucGGUGCACGCcauCGCGCCa -3'
miRNA:   3'- -CGaaa-UCGC--UCACGUGUGuc-GCGUGG- -5'
14722 3' -51.8 NC_003529.1 + 67886 0.68 0.963361
Target:  5'- uGCUgucUAGCGuGuUGCugACGGaccaguCGCGCCu -3'
miRNA:   3'- -CGAa--AUCGCuC-ACGugUGUC------GCGUGG- -5'
14722 3' -51.8 NC_003529.1 + 51181 0.68 0.963361
Target:  5'- --aUUGGCGAucgacucgucauGUGUACAUugaacgaguGGCGCACUa -3'
miRNA:   3'- cgaAAUCGCU------------CACGUGUG---------UCGCGUGG- -5'
14722 3' -51.8 NC_003529.1 + 44334 0.68 0.955937
Target:  5'- --gUUGuCGAGUGCGuUACAGCGCAUCu -3'
miRNA:   3'- cgaAAUcGCUCACGU-GUGUCGCGUGG- -5'
14722 3' -51.8 NC_003529.1 + 115637 0.68 0.951867
Target:  5'- cCUUUAGCGGucauuccgccauGUcuaacGCgACGCAGCGCACg -3'
miRNA:   3'- cGAAAUCGCU------------CA-----CG-UGUGUCGCGUGg -5'
14722 3' -51.8 NC_003529.1 + 106047 0.69 0.933107
Target:  5'- gGCUUgcGCgGAGUGCACAgCGacCGCAUCa -3'
miRNA:   3'- -CGAAauCG-CUCACGUGU-GUc-GCGUGG- -5'
14722 3' -51.8 NC_003529.1 + 29752 0.7 0.903962
Target:  5'- aGCUUUuccuGCaAGUGCACcucuugucgccACAGCGguCCg -3'
miRNA:   3'- -CGAAAu---CGcUCACGUG-----------UGUCGCguGG- -5'
14722 3' -51.8 NC_003529.1 + 43866 0.72 0.836268
Target:  5'- ----cGGCGGGUacuGCACcacgaGCAGCGUGCCg -3'
miRNA:   3'- cgaaaUCGCUCA---CGUG-----UGUCGCGUGG- -5'
14722 3' -51.8 NC_003529.1 + 75204 1.14 0.003265
Target:  5'- cGCUUUAGCGAGUGCACACAGCGCACCc -3'
miRNA:   3'- -CGAAAUCGCUCACGUGUGUCGCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.