miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14722 5' -58 NC_003529.1 + 143397 0.66 0.864674
Target:  5'- -gAUCAUGCCGGCGAUGcucaagucguccACgGCgAUAGu -3'
miRNA:   3'- ggUAGUGCGGCCGCUGC------------UGgCG-UGUC- -5'
14722 5' -58 NC_003529.1 + 112726 0.66 0.849657
Target:  5'- gCCAUUA-GUCGGCGcCG-CCGCAguGu -3'
miRNA:   3'- -GGUAGUgCGGCCGCuGCuGGCGUguC- -5'
14722 5' -58 NC_003529.1 + 3533 0.66 0.841866
Target:  5'- uCCAUgGCGUCGacaaaagguGCGGCGGCgGCGuCGGc -3'
miRNA:   3'- -GGUAgUGCGGC---------CGCUGCUGgCGU-GUC- -5'
14722 5' -58 NC_003529.1 + 132320 0.67 0.833895
Target:  5'- gCCAgCACaCCGGCGAcagaaCGAUgGCGCAu -3'
miRNA:   3'- -GGUaGUGcGGCCGCU-----GCUGgCGUGUc -5'
14722 5' -58 NC_003529.1 + 110245 0.67 0.833895
Target:  5'- gCCuaUACGCCGGUGcaaGCGAUUGcCGCAGc -3'
miRNA:   3'- -GGuaGUGCGGCCGC---UGCUGGC-GUGUC- -5'
14722 5' -58 NC_003529.1 + 145175 0.67 0.825751
Target:  5'- gCCGUUGCcCCGGCGACGucgacGCUGCGa-- -3'
miRNA:   3'- -GGUAGUGcGGCCGCUGC-----UGGCGUguc -5'
14722 5' -58 NC_003529.1 + 100484 0.67 0.822447
Target:  5'- gCGUCGCGUCaacaucaucagcaGCGGCGAUCGCgACGGu -3'
miRNA:   3'- gGUAGUGCGGc------------CGCUGCUGGCG-UGUC- -5'
14722 5' -58 NC_003529.1 + 129729 0.67 0.817441
Target:  5'- aCCAcCACGCCGGCcAUGugUaGCAUAu -3'
miRNA:   3'- -GGUaGUGCGGCCGcUGCugG-CGUGUc -5'
14722 5' -58 NC_003529.1 + 75776 0.67 0.817441
Target:  5'- gCAUCaAUGCCaGCGAgGGCgGCACu- -3'
miRNA:   3'- gGUAG-UGCGGcCGCUgCUGgCGUGuc -5'
14722 5' -58 NC_003529.1 + 31895 0.67 0.806402
Target:  5'- -gAUCAUGCCGcacgaauuaacaccGCGACGGauUCGCACAu -3'
miRNA:   3'- ggUAGUGCGGC--------------CGCUGCU--GGCGUGUc -5'
14722 5' -58 NC_003529.1 + 67470 0.67 0.800352
Target:  5'- aCCgAUUGCGCaaaGGCGGCGGcaauCCGUACGu -3'
miRNA:   3'- -GG-UAGUGCGg--CCGCUGCU----GGCGUGUc -5'
14722 5' -58 NC_003529.1 + 142134 0.67 0.788933
Target:  5'- gCGUUACGCUgccgacaaacuuuuGGCGGCGAgC-CACAGa -3'
miRNA:   3'- gGUAGUGCGG--------------CCGCUGCUgGcGUGUC- -5'
14722 5' -58 NC_003529.1 + 9986 0.68 0.782689
Target:  5'- gCCAcgGCGCCGGCGGCGAggaggagGCAgAGu -3'
miRNA:   3'- -GGUagUGCGGCCGCUGCUgg-----CGUgUC- -5'
14722 5' -58 NC_003529.1 + 116494 0.68 0.773662
Target:  5'- aCCAUCAUuugcauuaGCUGGguCGACGGCgGCACu- -3'
miRNA:   3'- -GGUAGUG--------CGGCC--GCUGCUGgCGUGuc -5'
14722 5' -58 NC_003529.1 + 96151 0.68 0.764516
Target:  5'- gCAUgaGCGCCGGCaGCGuggaggagGCCGCGCGc -3'
miRNA:   3'- gGUAg-UGCGGCCGcUGC--------UGGCGUGUc -5'
14722 5' -58 NC_003529.1 + 20332 0.68 0.736446
Target:  5'- aCCGUCuucccaagUGCCGGCGACGggaccggugGCCGUGCc- -3'
miRNA:   3'- -GGUAGu-------GCGGCCGCUGC---------UGGCGUGuc -5'
14722 5' -58 NC_003529.1 + 96326 0.69 0.688062
Target:  5'- uCCA-CGCuGCCGGCGcucauGCGAuCCGCACc- -3'
miRNA:   3'- -GGUaGUG-CGGCCGC-----UGCU-GGCGUGuc -5'
14722 5' -58 NC_003529.1 + 81014 0.69 0.688062
Target:  5'- gCCAUCA--CCGGCcaACGACCGUACGu -3'
miRNA:   3'- -GGUAGUgcGGCCGc-UGCUGGCGUGUc -5'
14722 5' -58 NC_003529.1 + 8581 0.7 0.67822
Target:  5'- aCCG-CGCGCguaguCGGCGGCGAaCCGCgACAc -3'
miRNA:   3'- -GGUaGUGCG-----GCCGCUGCU-GGCG-UGUc -5'
14722 5' -58 NC_003529.1 + 63392 0.7 0.668343
Target:  5'- --cUCGCGCuCGGCGGCGuuGCCuGCACu- -3'
miRNA:   3'- gguAGUGCG-GCCGCUGC--UGG-CGUGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.