Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 14723 | 5' | -54 | NC_003529.1 | + | 114734 | 0.66 | 0.94433 |
|
Target: 5'- -gUGGCg--G-GUUGACGCACGUCGg -3' miRNA: 3'- guGCCGagaCgCAACUGCGUGUAGUa -5' |
|||||||
| 14723 | 5' | -54 | NC_003529.1 | + | 68923 | 0.68 | 0.892904 |
|
Target: 5'- cCACGGUgccgaaUGCGUUGGCGCcggaAUCGg -3' miRNA: 3'- -GUGCCGag----ACGCAACUGCGug--UAGUa -5' |
|||||||
| 14723 | 5' | -54 | NC_003529.1 | + | 38807 | 0.7 | 0.785947 |
|
Target: 5'- cCACGGCaaUGUGUUGAuCGCGCAauuguUCAa -3' miRNA: 3'- -GUGCCGagACGCAACU-GCGUGU-----AGUa -5' |
|||||||
| 14723 | 5' | -54 | NC_003529.1 | + | 32504 | 0.7 | 0.776458 |
|
Target: 5'- aGCGGCUUUGCGU----GCACGUCGc -3' miRNA: 3'- gUGCCGAGACGCAacugCGUGUAGUa -5' |
|||||||
| 14723 | 5' | -54 | NC_003529.1 | + | 51125 | 0.74 | 0.591916 |
|
Target: 5'- aCACGGacaauuaUGUGUUGGCGCGCAUCu- -3' miRNA: 3'- -GUGCCgag----ACGCAACUGCGUGUAGua -5' |
|||||||
| 14723 | 5' | -54 | NC_003529.1 | + | 93873 | 1.06 | 0.006053 |
|
Target: 5'- gCACGGCUCUGCGUUGACGCACAUCAUg -3' miRNA: 3'- -GUGCCGAGACGCAACUGCGUGUAGUA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home