Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14724 | 3' | -49.9 | NC_003529.1 | + | 94043 | 1.08 | 0.013277 |
Target: 5'- gUAAGACACACACGCCGUCGACAAACAu -3' miRNA: 3'- -AUUCUGUGUGUGCGGCAGCUGUUUGU- -5' |
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14724 | 3' | -49.9 | NC_003529.1 | + | 94266 | 0.81 | 0.455311 |
Target: 5'- gAAGGCGgcuCGCACGUCGUCGACGAAUg -3' miRNA: 3'- aUUCUGU---GUGUGCGGCAGCUGUUUGu -5' |
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14724 | 3' | -49.9 | NC_003529.1 | + | 131766 | 0.78 | 0.641719 |
Target: 5'- -uGGGCGaaagcaGCACGUCGUCGGCGGGCAc -3' miRNA: 3'- auUCUGUg-----UGUGCGGCAGCUGUUUGU- -5' |
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14724 | 3' | -49.9 | NC_003529.1 | + | 101575 | 0.76 | 0.70551 |
Target: 5'- --cGACACaucgaACGCGCCGUCGGCcacGACAa -3' miRNA: 3'- auuCUGUG-----UGUGCGGCAGCUGu--UUGU- -5' |
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14724 | 3' | -49.9 | NC_003529.1 | + | 54893 | 0.74 | 0.840899 |
Target: 5'- cGAGACGCAgGuCGCCGUCGcCgAGACGu -3' miRNA: 3'- aUUCUGUGUgU-GCGGCAGCuG-UUUGU- -5' |
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14724 | 3' | -49.9 | NC_003529.1 | + | 45437 | 0.71 | 0.920555 |
Target: 5'- ---cGCGCACGCGCC-UCGACcuACAg -3' miRNA: 3'- auucUGUGUGUGCGGcAGCUGuuUGU- -5' |
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14724 | 3' | -49.9 | NC_003529.1 | + | 62581 | 0.71 | 0.941909 |
Target: 5'- gGAGAUGCGCACGCaaaucgaGUCGguguGCGAGCu -3' miRNA: 3'- aUUCUGUGUGUGCGg------CAGC----UGUUUGu -5' |
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14724 | 3' | -49.9 | NC_003529.1 | + | 87087 | 0.7 | 0.951027 |
Target: 5'- gAAGACACugGCGCUG-CGACc---- -3' miRNA: 3'- aUUCUGUGugUGCGGCaGCUGuuugu -5' |
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14724 | 3' | -49.9 | NC_003529.1 | + | 108954 | 0.69 | 0.966269 |
Target: 5'- --cGACAguUugAUGCCGUCGGC-AGCAu -3' miRNA: 3'- auuCUGU--GugUGCGGCAGCUGuUUGU- -5' |
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14724 | 3' | -49.9 | NC_003529.1 | + | 42787 | 0.69 | 0.966269 |
Target: 5'- -uGGACACGCugGCUGUauGCGagGACAa -3' miRNA: 3'- auUCUGUGUGugCGGCAgcUGU--UUGU- -5' |
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14724 | 3' | -49.9 | NC_003529.1 | + | 110782 | 0.69 | 0.972476 |
Target: 5'- aAAGACACACuaaaaACGuCCGUgGACG-ACAu -3' miRNA: 3'- aUUCUGUGUG-----UGC-GGCAgCUGUuUGU- -5' |
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14724 | 3' | -49.9 | NC_003529.1 | + | 17016 | 0.69 | 0.975249 |
Target: 5'- cAAGugGCACGCGCCGaguAUAAACu -3' miRNA: 3'- aUUCugUGUGUGCGGCagcUGUUUGu -5' |
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14724 | 3' | -49.9 | NC_003529.1 | + | 9992 | 0.69 | 0.977813 |
Target: 5'- aAAGGCGcCACgGCGCCGgCGGCGAGgAg -3' miRNA: 3'- aUUCUGU-GUG-UGCGGCaGCUGUUUgU- -5' |
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14724 | 3' | -49.9 | NC_003529.1 | + | 54582 | 0.68 | 0.986143 |
Target: 5'- gGAGACAUugaacgucuGCugGCCGaacUCGACGcGCGc -3' miRNA: 3'- aUUCUGUG---------UGugCGGC---AGCUGUuUGU- -5' |
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14724 | 3' | -49.9 | NC_003529.1 | + | 137360 | 0.68 | 0.98779 |
Target: 5'- aUAAGGCcgugcuuuuguGCGCGCGCCGcucuuaCGACAGuACAg -3' miRNA: 3'- -AUUCUG-----------UGUGUGCGGCa-----GCUGUU-UGU- -5' |
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14724 | 3' | -49.9 | NC_003529.1 | + | 77464 | 0.67 | 0.989281 |
Target: 5'- gGAGAUAcCGCACGUCGugguguucgaucUCGACAAcACAc -3' miRNA: 3'- aUUCUGU-GUGUGCGGC------------AGCUGUU-UGU- -5' |
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14724 | 3' | -49.9 | NC_003529.1 | + | 56207 | 0.67 | 0.989281 |
Target: 5'- --cGGCGCACcauaucaGUCGUgGACAGACAc -3' miRNA: 3'- auuCUGUGUGug-----CGGCAgCUGUUUGU- -5' |
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14724 | 3' | -49.9 | NC_003529.1 | + | 78778 | 0.67 | 0.990626 |
Target: 5'- -cAGAUAUACGCGaaGUaugGACAAACAu -3' miRNA: 3'- auUCUGUGUGUGCggCAg--CUGUUUGU- -5' |
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14724 | 3' | -49.9 | NC_003529.1 | + | 127445 | 0.67 | 0.991835 |
Target: 5'- aAAGACcaucaacaaACugACGCgCGUCuACAAGCAa -3' miRNA: 3'- aUUCUG---------UGugUGCG-GCAGcUGUUUGU- -5' |
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14724 | 3' | -49.9 | NC_003529.1 | + | 68584 | 0.67 | 0.992917 |
Target: 5'- ---aACACGuggucgaGCGCCGUCGACuuuGGCAu -3' miRNA: 3'- auucUGUGUg------UGCGGCAGCUGu--UUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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