miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14724 5' -55.2 NC_003529.1 + 143417 0.66 0.94835
Target:  5'- cGGCA--UGUCGGUGuACGgucGCGAGCa- -3'
miRNA:   3'- -CCGUaaGCAGCCGU-UGCa--CGCUCGgc -5'
14724 5' -55.2 NC_003529.1 + 102517 0.66 0.94835
Target:  5'- uGCucuaCGUCGGaCAugGUGCGAuGgCGg -3'
miRNA:   3'- cCGuaa-GCAGCC-GUugCACGCU-CgGC- -5'
14724 5' -55.2 NC_003529.1 + 61698 0.66 0.943999
Target:  5'- uGCAcUUGUCGGCAAuuaacugcCGUGCGAaaucGUCa -3'
miRNA:   3'- cCGUaAGCAGCCGUU--------GCACGCU----CGGc -5'
14724 5' -55.2 NC_003529.1 + 93834 0.66 0.929543
Target:  5'- ----aUCGUCGGUGAUGUacGUGuAGCCGg -3'
miRNA:   3'- ccguaAGCAGCCGUUGCA--CGC-UCGGC- -5'
14724 5' -55.2 NC_003529.1 + 91022 0.66 0.929543
Target:  5'- cGguUUCGUCGGCGGuacCGUaCGAGCg- -3'
miRNA:   3'- cCguAAGCAGCCGUU---GCAcGCUCGgc -5'
14724 5' -55.2 NC_003529.1 + 24777 0.67 0.924252
Target:  5'- uGGUGUUUGUCGauGCGACuUGgGuGCCGa -3'
miRNA:   3'- -CCGUAAGCAGC--CGUUGcACgCuCGGC- -5'
14724 5' -55.2 NC_003529.1 + 50816 0.67 0.918725
Target:  5'- cGGCAUuucgggauagguUCGUCGGUucAUGUGC--GCCGc -3'
miRNA:   3'- -CCGUA------------AGCAGCCGu-UGCACGcuCGGC- -5'
14724 5' -55.2 NC_003529.1 + 120747 0.68 0.873548
Target:  5'- aGCAaa-GUUGGCGGCG-GCGcGCCGu -3'
miRNA:   3'- cCGUaagCAGCCGUUGCaCGCuCGGC- -5'
14724 5' -55.2 NC_003529.1 + 92611 0.68 0.873548
Target:  5'- uGUGUUCGUCuGCAACGUcGCacGCCGa -3'
miRNA:   3'- cCGUAAGCAGcCGUUGCA-CGcuCGGC- -5'
14724 5' -55.2 NC_003529.1 + 21287 0.68 0.858654
Target:  5'- gGGCAguUUCGaagCGuuGCAACGUucgugcGCGGGCCGu -3'
miRNA:   3'- -CCGU--AAGCa--GC--CGUUGCA------CGCUCGGC- -5'
14724 5' -55.2 NC_003529.1 + 131701 0.69 0.80933
Target:  5'- cGGCAcaaUCGUCGGUGGCc-GCGAugGCCGu -3'
miRNA:   3'- -CCGUa--AGCAGCCGUUGcaCGCU--CGGC- -5'
14724 5' -55.2 NC_003529.1 + 96150 0.7 0.800507
Target:  5'- cGCAUgagCGcCGGCAGCGUGgaGgaGGCCGc -3'
miRNA:   3'- cCGUAa--GCaGCCGUUGCACg-C--UCGGC- -5'
14724 5' -55.2 NC_003529.1 + 94081 0.97 0.025064
Target:  5'- gGGCAUUCGUCGaCGACGUGCGAGCCGc -3'
miRNA:   3'- -CCGUAAGCAGCcGUUGCACGCUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.