Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14724 | 5' | -55.2 | NC_003529.1 | + | 143417 | 0.66 | 0.94835 |
Target: 5'- cGGCA--UGUCGGUGuACGgucGCGAGCa- -3' miRNA: 3'- -CCGUaaGCAGCCGU-UGCa--CGCUCGgc -5' |
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14724 | 5' | -55.2 | NC_003529.1 | + | 102517 | 0.66 | 0.94835 |
Target: 5'- uGCucuaCGUCGGaCAugGUGCGAuGgCGg -3' miRNA: 3'- cCGuaa-GCAGCC-GUugCACGCU-CgGC- -5' |
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14724 | 5' | -55.2 | NC_003529.1 | + | 61698 | 0.66 | 0.943999 |
Target: 5'- uGCAcUUGUCGGCAAuuaacugcCGUGCGAaaucGUCa -3' miRNA: 3'- cCGUaAGCAGCCGUU--------GCACGCU----CGGc -5' |
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14724 | 5' | -55.2 | NC_003529.1 | + | 93834 | 0.66 | 0.929543 |
Target: 5'- ----aUCGUCGGUGAUGUacGUGuAGCCGg -3' miRNA: 3'- ccguaAGCAGCCGUUGCA--CGC-UCGGC- -5' |
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14724 | 5' | -55.2 | NC_003529.1 | + | 91022 | 0.66 | 0.929543 |
Target: 5'- cGguUUCGUCGGCGGuacCGUaCGAGCg- -3' miRNA: 3'- cCguAAGCAGCCGUU---GCAcGCUCGgc -5' |
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14724 | 5' | -55.2 | NC_003529.1 | + | 24777 | 0.67 | 0.924252 |
Target: 5'- uGGUGUUUGUCGauGCGACuUGgGuGCCGa -3' miRNA: 3'- -CCGUAAGCAGC--CGUUGcACgCuCGGC- -5' |
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14724 | 5' | -55.2 | NC_003529.1 | + | 50816 | 0.67 | 0.918725 |
Target: 5'- cGGCAUuucgggauagguUCGUCGGUucAUGUGC--GCCGc -3' miRNA: 3'- -CCGUA------------AGCAGCCGu-UGCACGcuCGGC- -5' |
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14724 | 5' | -55.2 | NC_003529.1 | + | 120747 | 0.68 | 0.873548 |
Target: 5'- aGCAaa-GUUGGCGGCG-GCGcGCCGu -3' miRNA: 3'- cCGUaagCAGCCGUUGCaCGCuCGGC- -5' |
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14724 | 5' | -55.2 | NC_003529.1 | + | 92611 | 0.68 | 0.873548 |
Target: 5'- uGUGUUCGUCuGCAACGUcGCacGCCGa -3' miRNA: 3'- cCGUAAGCAGcCGUUGCA-CGcuCGGC- -5' |
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14724 | 5' | -55.2 | NC_003529.1 | + | 21287 | 0.68 | 0.858654 |
Target: 5'- gGGCAguUUCGaagCGuuGCAACGUucgugcGCGGGCCGu -3' miRNA: 3'- -CCGU--AAGCa--GC--CGUUGCA------CGCUCGGC- -5' |
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14724 | 5' | -55.2 | NC_003529.1 | + | 131701 | 0.69 | 0.80933 |
Target: 5'- cGGCAcaaUCGUCGGUGGCc-GCGAugGCCGu -3' miRNA: 3'- -CCGUa--AGCAGCCGUUGcaCGCU--CGGC- -5' |
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14724 | 5' | -55.2 | NC_003529.1 | + | 96150 | 0.7 | 0.800507 |
Target: 5'- cGCAUgagCGcCGGCAGCGUGgaGgaGGCCGc -3' miRNA: 3'- cCGUAa--GCaGCCGUUGCACg-C--UCGGC- -5' |
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14724 | 5' | -55.2 | NC_003529.1 | + | 94081 | 0.97 | 0.025064 |
Target: 5'- gGGCAUUCGUCGaCGACGUGCGAGCCGc -3' miRNA: 3'- -CCGUAAGCAGCcGUUGCACGCUCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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