miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14725 5' -52 NC_003529.1 + 53571 0.66 0.986683
Target:  5'- uGUUCCAUGUugccugguuGCAGACAucuuagucCGCUGUuuGCCa -3'
miRNA:   3'- -CAGGGUACA---------CGUCUGU--------GCGGUAu-UGG- -5'
14725 5' -52 NC_003529.1 + 7186 0.66 0.984955
Target:  5'- cGUUCgAUGcguaaGCAGACACGUCGUuGCg -3'
miRNA:   3'- -CAGGgUACa----CGUCUGUGCGGUAuUGg -5'
14725 5' -52 NC_003529.1 + 126474 0.66 0.984955
Target:  5'- uGUUCCAuUGUGUcuuGCAUGUCAUAAUCa -3'
miRNA:   3'- -CAGGGU-ACACGuc-UGUGCGGUAUUGG- -5'
14725 5' -52 NC_003529.1 + 29958 0.66 0.980991
Target:  5'- cGUUCgGUGaGCGGAC-CGCUGUGGCg -3'
miRNA:   3'- -CAGGgUACaCGUCUGuGCGGUAUUGg -5'
14725 5' -52 NC_003529.1 + 45064 0.67 0.977049
Target:  5'- aGUCCCGuaggcuauucguuauUGUGCAGcugccuCACGCCcggucuuGUGACa -3'
miRNA:   3'- -CAGGGU---------------ACACGUCu-----GUGCGG-------UAUUGg -5'
14725 5' -52 NC_003529.1 + 14716 0.67 0.97365
Target:  5'- gGUCCCcuGUGUaGCAGGCGauuagauguUGCCAUAuugaauguuGCCc -3'
miRNA:   3'- -CAGGG--UACA-CGUCUGU---------GCGGUAU---------UGG- -5'
14725 5' -52 NC_003529.1 + 35790 0.68 0.948962
Target:  5'- aGUCCCAUGUaGUuGugG-GCgGUGACCg -3'
miRNA:   3'- -CAGGGUACA-CGuCugUgCGgUAUUGG- -5'
14725 5' -52 NC_003529.1 + 11974 0.69 0.934781
Target:  5'- -aCCUGUGUGCAGugAugacuUGCCAUAuuuaaaacuaACCu -3'
miRNA:   3'- caGGGUACACGUCugU-----GCGGUAU----------UGG- -5'
14725 5' -52 NC_003529.1 + 98322 0.69 0.918328
Target:  5'- -gCCCA-GUGuCGGuGCACGCCAUcgcGCCa -3'
miRNA:   3'- caGGGUaCAC-GUC-UGUGCGGUAu--UGG- -5'
14725 5' -52 NC_003529.1 + 71456 0.71 0.847517
Target:  5'- uUCCCAU-UGCAGGCGaauCGCCccugGACCa -3'
miRNA:   3'- cAGGGUAcACGUCUGU---GCGGua--UUGG- -5'
14725 5' -52 NC_003529.1 + 88876 0.76 0.579927
Target:  5'- uGUCCUGUGUGCAGA-ACGUUAUGuACCa -3'
miRNA:   3'- -CAGGGUACACGUCUgUGCGGUAU-UGG- -5'
14725 5' -52 NC_003529.1 + 126338 1.13 0.003732
Target:  5'- uGUCCCAUGUGCAGACACGCCAUAACCa -3'
miRNA:   3'- -CAGGGUACACGUCUGUGCGGUAUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.