miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14726 3' -46 NC_003529.1 + 40303 0.66 0.999965
Target:  5'- cUGAUAAUc-UGAGCGCAA-CGAUGCa -3'
miRNA:   3'- uACUAUUAcuGCUCGCGUUaGUUGUG- -5'
14726 3' -46 NC_003529.1 + 147910 0.66 0.999965
Target:  5'- gAUGAUGAUGAUGAuaaUGguGUUAAUACu -3'
miRNA:   3'- -UACUAUUACUGCUc--GCguUAGUUGUG- -5'
14726 3' -46 NC_003529.1 + 3391 0.66 0.999965
Target:  5'- gAUGAUGAUGAUGAcUGC-GUCAugAUu -3'
miRNA:   3'- -UACUAUUACUGCUcGCGuUAGUugUG- -5'
14726 3' -46 NC_003529.1 + 82797 0.66 0.999965
Target:  5'- uGUGAUAuugcggaauugcGUGACGGGCGCug-CAAa-- -3'
miRNA:   3'- -UACUAU------------UACUGCUCGCGuuaGUUgug -5'
14726 3' -46 NC_003529.1 + 74666 0.66 0.999965
Target:  5'- -cGAaAAUGGCGAGCcGUGAUgGACcACg -3'
miRNA:   3'- uaCUaUUACUGCUCG-CGUUAgUUG-UG- -5'
14726 3' -46 NC_003529.1 + 62892 0.66 0.999964
Target:  5'- uUGAUGcguAUGACGAGgcauuuccaguguUGCAuaaaacccauGUCGACACa -3'
miRNA:   3'- uACUAU---UACUGCUC-------------GCGU----------UAGUUGUG- -5'
14726 3' -46 NC_003529.1 + 68580 0.66 0.999953
Target:  5'- cAUGAacacGUGGuCGAGCGCcGUCGACu- -3'
miRNA:   3'- -UACUau--UACU-GCUCGCGuUAGUUGug -5'
14726 3' -46 NC_003529.1 + 34280 0.66 0.999953
Target:  5'- -cGGUAucGACGAGCcCGuAUCAACAUg -3'
miRNA:   3'- uaCUAUuaCUGCUCGcGU-UAGUUGUG- -5'
14726 3' -46 NC_003529.1 + 38472 0.66 0.999888
Target:  5'- cAUGGUuucguuguUGACGucauGCGCAAUC-ACGCc -3'
miRNA:   3'- -UACUAuu------ACUGCu---CGCGUUAGuUGUG- -5'
14726 3' -46 NC_003529.1 + 116022 0.67 0.999803
Target:  5'- cGUGAUGGUGcgcgagaACGAGCGUAGUaaaauuuACAUa -3'
miRNA:   3'- -UACUAUUAC-------UGCUCGCGUUAgu-----UGUG- -5'
14726 3' -46 NC_003529.1 + 54635 0.67 0.999793
Target:  5'- gGUGGUGAUGgggacagcaucgagGCGAaCGCGAUCuACGCc -3'
miRNA:   3'- -UACUAUUAC--------------UGCUcGCGUUAGuUGUG- -5'
14726 3' -46 NC_003529.1 + 21950 0.67 0.999753
Target:  5'- cGUGAUcgcggaccAAUGGCGuGCGuCGGUUAugGCg -3'
miRNA:   3'- -UACUA--------UUACUGCuCGC-GUUAGUugUG- -5'
14726 3' -46 NC_003529.1 + 94348 0.67 0.999753
Target:  5'- -gGGUcGGUGGCGuGCGCu-UUAACGCg -3'
miRNA:   3'- uaCUA-UUACUGCuCGCGuuAGUUGUG- -5'
14726 3' -46 NC_003529.1 + 34511 0.67 0.999683
Target:  5'- -cGGUAGUGACGAaGCGUGuGUCAgugaccagauauACACu -3'
miRNA:   3'- uaCUAUUACUGCU-CGCGU-UAGU------------UGUG- -5'
14726 3' -46 NC_003529.1 + 94654 0.68 0.999596
Target:  5'- -cGAguAUGuCGuGCGCAcaAUCAGCACc -3'
miRNA:   3'- uaCUauUACuGCuCGCGU--UAGUUGUG- -5'
14726 3' -46 NC_003529.1 + 85081 0.68 0.99949
Target:  5'- gAUGAUGAUGACGAuaaUGUu-UCGGCACc -3'
miRNA:   3'- -UACUAUUACUGCUc--GCGuuAGUUGUG- -5'
14726 3' -46 NC_003529.1 + 98185 0.68 0.99949
Target:  5'- cUGAUcAUGuuGAGCGCGGucuguccauuUCGACGCc -3'
miRNA:   3'- uACUAuUACugCUCGCGUU----------AGUUGUG- -5'
14726 3' -46 NC_003529.1 + 132947 0.68 0.99949
Target:  5'- -cGAUGAUGACGA-CGCcAUCAuuaaagguuuGCGCc -3'
miRNA:   3'- uaCUAUUACUGCUcGCGuUAGU----------UGUG- -5'
14726 3' -46 NC_003529.1 + 134488 0.69 0.998787
Target:  5'- ----cAGUGuCGGGCGCA-UCAACAUg -3'
miRNA:   3'- uacuaUUACuGCUCGCGUuAGUUGUG- -5'
14726 3' -46 NC_003529.1 + 129306 0.7 0.997386
Target:  5'- gGUGGUAGUGGCGccagagauuauGCGCAA-CGACAa -3'
miRNA:   3'- -UACUAUUACUGCu----------CGCGUUaGUUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.