Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1473 | 5' | -54.2 | NC_001335.1 | + | 4704 | 0.66 | 0.710872 |
Target: 5'- -gCCUGGU--GCuGCAGA-CCGGGGCu -3' miRNA: 3'- gaGGACCAgaCGuCGUCUaGGUCUUG- -5' |
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1473 | 5' | -54.2 | NC_001335.1 | + | 16489 | 1.1 | 0.00078 |
Target: 5'- gCUCCUGGUCUGCAGCAGAUCCAGAACa -3' miRNA: 3'- -GAGGACCAGACGUCGUCUAGGUCUUG- -5' |
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1473 | 5' | -54.2 | NC_001335.1 | + | 36758 | 0.69 | 0.531915 |
Target: 5'- -aCCUGG-C-GCAGCGGcUCCAGGAa -3' miRNA: 3'- gaGGACCaGaCGUCGUCuAGGUCUUg -5' |
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1473 | 5' | -54.2 | NC_001335.1 | + | 6879 | 0.69 | 0.540671 |
Target: 5'- -gCCUGGUCcucuggugguacGCAGUAGAUgaCCAGGGCc -3' miRNA: 3'- gaGGACCAGa-----------CGUCGUCUA--GGUCUUG- -5' |
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1473 | 5' | -54.2 | NC_001335.1 | + | 5899 | 0.68 | 0.609837 |
Target: 5'- -gCCUGGUCUGCcuGCcGAUaccgcaCGGGACg -3' miRNA: 3'- gaGGACCAGACGu-CGuCUAg-----GUCUUG- -5' |
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1473 | 5' | -54.2 | NC_001335.1 | + | 15524 | 0.68 | 0.609837 |
Target: 5'- gUCgUGGUggGCAGCAGuaCCGGGGCu -3' miRNA: 3'- gAGgACCAgaCGUCGUCuaGGUCUUG- -5' |
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1473 | 5' | -54.2 | NC_001335.1 | + | 24085 | 0.67 | 0.64372 |
Target: 5'- gCUCCUGG-CgGCGGCGGggCUGGuGCc -3' miRNA: 3'- -GAGGACCaGaCGUCGUCuaGGUCuUG- -5' |
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1473 | 5' | -54.2 | NC_001335.1 | + | 47143 | 0.67 | 0.66627 |
Target: 5'- uCUUCUGGUU--CAGCGGAUCUGGucGACg -3' miRNA: 3'- -GAGGACCAGacGUCGUCUAGGUC--UUG- -5' |
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1473 | 5' | -54.2 | NC_001335.1 | + | 40130 | 0.66 | 0.699814 |
Target: 5'- uCUCCgGGUCgauccGCuuGUGGGUCCAGAc- -3' miRNA: 3'- -GAGGaCCAGa----CGu-CGUCUAGGUCUug -5' |
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1473 | 5' | -54.2 | NC_001335.1 | + | 4775 | 0.77 | 0.193837 |
Target: 5'- -cCCcGGUCUGCAGCAccaggCCAGAGCa -3' miRNA: 3'- gaGGaCCAGACGUCGUcua--GGUCUUG- -5' |
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1473 | 5' | -54.2 | NC_001335.1 | + | 16566 | 0.73 | 0.336807 |
Target: 5'- gUUCUGGaUCUGCuGCAGA-CCAGGAg -3' miRNA: 3'- gAGGACC-AGACGuCGUCUaGGUCUUg -5' |
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1473 | 5' | -54.2 | NC_001335.1 | + | 36831 | 0.66 | 0.710872 |
Target: 5'- uUCCUGGagccgCUGCGcCAGGUCUAcGACg -3' miRNA: 3'- gAGGACCa----GACGUcGUCUAGGUcUUG- -5' |
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1473 | 5' | -54.2 | NC_001335.1 | + | 26263 | 0.66 | 0.700923 |
Target: 5'- gUCCcGGUCgggcgcagucaagcgGCAGCGGGcUCCAGGc- -3' miRNA: 3'- gAGGaCCAGa--------------CGUCGUCU-AGGUCUug -5' |
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1473 | 5' | -54.2 | NC_001335.1 | + | 12557 | 0.66 | 0.699814 |
Target: 5'- gUCUUGGUgUUGC-GCGGuuUCCGGGGCa -3' miRNA: 3'- gAGGACCA-GACGuCGUCu-AGGUCUUG- -5' |
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1473 | 5' | -54.2 | NC_001335.1 | + | 22536 | 0.67 | 0.677501 |
Target: 5'- gUCCUGGUCUGggacgcgccCGGUgAGGgcuccCCAGAACu -3' miRNA: 3'- gAGGACCAGAC---------GUCG-UCUa----GGUCUUG- -5' |
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1473 | 5' | -54.2 | NC_001335.1 | + | 20205 | 0.67 | 0.64372 |
Target: 5'- gUCCcGGagcgggaucuUCUGCAGCAGGUCUucGACa -3' miRNA: 3'- gAGGaCC----------AGACGUCGUCUAGGucUUG- -5' |
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1473 | 5' | -54.2 | NC_001335.1 | + | 41492 | 0.69 | 0.531915 |
Target: 5'- gUCCUGGUCUGCGcCGGccCCGGcACc -3' miRNA: 3'- gAGGACCAGACGUcGUCuaGGUCuUG- -5' |
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1473 | 5' | -54.2 | NC_001335.1 | + | 11859 | 0.69 | 0.521042 |
Target: 5'- cCUCCUugguGGUCUGC-GCuaggaAGGUCgGGAACg -3' miRNA: 3'- -GAGGA----CCAGACGuCG-----UCUAGgUCUUG- -5' |
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1473 | 5' | -54.2 | NC_001335.1 | + | 21535 | 0.7 | 0.468123 |
Target: 5'- uCUCCUGGUCUGUgAGCuugcGAaugUCUGGAAUa -3' miRNA: 3'- -GAGGACCAGACG-UCGu---CU---AGGUCUUG- -5' |
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1473 | 5' | -54.2 | NC_001335.1 | + | 41576 | 0.66 | 0.710872 |
Target: 5'- aUCCgagGGUCgGCGGgGGAUCCGcuACc -3' miRNA: 3'- gAGGa--CCAGaCGUCgUCUAGGUcuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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