miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1474 3' -56.7 NC_001335.1 + 26529 0.66 0.626247
Target:  5'- -aCGCGGGCUCGccguaccCGGuCGCGcCUCCUc -3'
miRNA:   3'- ccGCGCUUGAGCaa-----GCC-GUGC-GAGGA- -5'
1474 3' -56.7 NC_001335.1 + 5526 0.66 0.615381
Target:  5'- uGGgGCGGGCUCGacgcugagUCGGCG-GCUgaCCUc -3'
miRNA:   3'- -CCgCGCUUGAGCa-------AGCCGUgCGA--GGA- -5'
1474 3' -56.7 NC_001335.1 + 42107 0.66 0.615381
Target:  5'- aGGCGUgGGACUCGgucgUCGGCaaggacgacACGgUCUg -3'
miRNA:   3'- -CCGCG-CUUGAGCa---AGCCG---------UGCgAGGa -5'
1474 3' -56.7 NC_001335.1 + 18958 0.67 0.604529
Target:  5'- aGGUGCGAACUUccccUGGC-CGUUCCc -3'
miRNA:   3'- -CCGCGCUUGAGcaa-GCCGuGCGAGGa -5'
1474 3' -56.7 NC_001335.1 + 36179 0.67 0.593699
Target:  5'- uGGCGCGAACgugCGUUCuugugcagguacGGCA-GCUUg- -3'
miRNA:   3'- -CCGCGCUUGa--GCAAG------------CCGUgCGAGga -5'
1474 3' -56.7 NC_001335.1 + 46371 0.67 0.572144
Target:  5'- aGCGC-AGCUCGUuccuugucgccUCGGUagagcaccaACGCUCCc -3'
miRNA:   3'- cCGCGcUUGAGCA-----------AGCCG---------UGCGAGGa -5'
1474 3' -56.7 NC_001335.1 + 45970 0.67 0.55078
Target:  5'- -aCGCGAAagaCGUUCGGCACcaGCaUCCg -3'
miRNA:   3'- ccGCGCUUga-GCAAGCCGUG--CG-AGGa -5'
1474 3' -56.7 NC_001335.1 + 17378 0.68 0.519221
Target:  5'- cGGCgGCGcGCUCa-UCGGCGCGCUg-- -3'
miRNA:   3'- -CCG-CGCuUGAGcaAGCCGUGCGAgga -5'
1474 3' -56.7 NC_001335.1 + 18168 0.68 0.498582
Target:  5'- -uCGCGAAgUCGacCGGUGCGCUCa- -3'
miRNA:   3'- ccGCGCUUgAGCaaGCCGUGCGAGga -5'
1474 3' -56.7 NC_001335.1 + 42346 0.69 0.439062
Target:  5'- cGGCGCGAGCcgCGUgcgucUCGGCGuccaaggcuCGCUgCa -3'
miRNA:   3'- -CCGCGCUUGa-GCA-----AGCCGU---------GCGAgGa -5'
1474 3' -56.7 NC_001335.1 + 28595 0.7 0.425763
Target:  5'- uGGCGC--ACUCGgcgcuccaucuccUUGGCGCGUUCCa -3'
miRNA:   3'- -CCGCGcuUGAGCa------------AGCCGUGCGAGGa -5'
1474 3' -56.7 NC_001335.1 + 45424 0.7 0.401714
Target:  5'- cGGCGCGGGCUCGUcaUGcCACGUcuUCCa -3'
miRNA:   3'- -CCGCGCUUGAGCAa-GCcGUGCG--AGGa -5'
1474 3' -56.7 NC_001335.1 + 12999 0.73 0.287967
Target:  5'- gGGCGCGGugUCGgUCGcuCGCGCUCa- -3'
miRNA:   3'- -CCGCGCUugAGCaAGCc-GUGCGAGga -5'
1474 3' -56.7 NC_001335.1 + 26219 0.73 0.28583
Target:  5'- aGGCGCGggUUCuggccgcgagacagGUacuUCGGCGUGCUCCg -3'
miRNA:   3'- -CCGCGCuuGAG--------------CA---AGCCGUGCGAGGa -5'
1474 3' -56.7 NC_001335.1 + 16602 1.1 0.000591
Target:  5'- cGGCGCGAACUCGUUCGGCACGCUCCUg -3'
miRNA:   3'- -CCGCGCUUGAGCAAGCCGUGCGAGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.