miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1474 5' -50.5 NC_001335.1 + 5256 0.66 0.920179
Target:  5'- cCAGGGG-UCGCCAGaucGCUggUCGACGc -3'
miRNA:   3'- cGUCCUCaAGUGGUUgc-CGA--AGUUGC- -5'
1474 5' -50.5 NC_001335.1 + 34414 0.66 0.913779
Target:  5'- cGguGGAGUg-GCCAGCGGCccgCuGCc -3'
miRNA:   3'- -CguCCUCAagUGGUUGCCGaa-GuUGc -5'
1474 5' -50.5 NC_001335.1 + 7068 0.66 0.907085
Target:  5'- cGCGuGGA--UCACCGucGCGGCcgUCAGCc -3'
miRNA:   3'- -CGU-CCUcaAGUGGU--UGCCGa-AGUUGc -5'
1474 5' -50.5 NC_001335.1 + 19058 0.66 0.907085
Target:  5'- -gAGGAGUUCcgcaACCGcCGGCUcaaGACGc -3'
miRNA:   3'- cgUCCUCAAG----UGGUuGCCGAag-UUGC- -5'
1474 5' -50.5 NC_001335.1 + 51532 0.67 0.885267
Target:  5'- gGCGGGuAGcgcauuaCGCCAGCGGCgcuaAACGa -3'
miRNA:   3'- -CGUCC-UCaa-----GUGGUUGCCGaag-UUGC- -5'
1474 5' -50.5 NC_001335.1 + 17576 0.67 0.877432
Target:  5'- cCAGGGccUgAUCAACGGCaUCGGCGg -3'
miRNA:   3'- cGUCCUcaAgUGGUUGCCGaAGUUGC- -5'
1474 5' -50.5 NC_001335.1 + 4461 0.67 0.877432
Target:  5'- cCAGGAGUcgaaccuggaACCGGCGGCUUUggaGACc -3'
miRNA:   3'- cGUCCUCAag--------UGGUUGCCGAAG---UUGc -5'
1474 5' -50.5 NC_001335.1 + 23723 0.67 0.8685
Target:  5'- gGCGGGGGUaaaggcauggcccUgGCUGACGGCUggGGCa -3'
miRNA:   3'- -CGUCCUCA-------------AgUGGUUGCCGAagUUGc -5'
1474 5' -50.5 NC_001335.1 + 1259 0.68 0.860955
Target:  5'- gGCGGaAGUggaGCCGGCGGCgguggCAGCa -3'
miRNA:   3'- -CGUCcUCAag-UGGUUGCCGaa---GUUGc -5'
1474 5' -50.5 NC_001335.1 + 29319 0.68 0.825
Target:  5'- cGCAGGAGcUUCGCguccuGGCGGCgcugUCgGGCGa -3'
miRNA:   3'- -CGUCCUC-AAGUGg----UUGCCGa---AG-UUGC- -5'
1474 5' -50.5 NC_001335.1 + 35857 0.68 0.825
Target:  5'- uGCAGGGGgagUCgACCAAuCGGUaccuggUCGACa -3'
miRNA:   3'- -CGUCCUCa--AG-UGGUU-GCCGa-----AGUUGc -5'
1474 5' -50.5 NC_001335.1 + 44332 0.69 0.77526
Target:  5'- -gAGGAGUUCACCcuCGGCggUGAgGu -3'
miRNA:   3'- cgUCCUCAAGUGGuuGCCGaaGUUgC- -5'
1474 5' -50.5 NC_001335.1 + 28384 0.7 0.764787
Target:  5'- uCAGGAGguacgCACCGGCGGCgu--ACa -3'
miRNA:   3'- cGUCCUCaa---GUGGUUGCCGaaguUGc -5'
1474 5' -50.5 NC_001335.1 + 32707 0.7 0.763732
Target:  5'- cGCAGGcuccGGUggaUCcgcgccgGCCAACGGCggCGGCGg -3'
miRNA:   3'- -CGUCC----UCA---AG-------UGGUUGCCGaaGUUGC- -5'
1474 5' -50.5 NC_001335.1 + 20198 0.7 0.743415
Target:  5'- aGCGGGAucUUCugCAGCaGGuCUUCGACa -3'
miRNA:   3'- -CGUCCUc-AAGugGUUG-CC-GAAGUUGc -5'
1474 5' -50.5 NC_001335.1 + 25815 0.7 0.732543
Target:  5'- gGCGGGcuggcGUUCGCCcugucguucACGGCUcUCAGCGa -3'
miRNA:   3'- -CGUCCu----CAAGUGGu--------UGCCGA-AGUUGC- -5'
1474 5' -50.5 NC_001335.1 + 22853 0.7 0.721561
Target:  5'- cGCAGGgaGGUUCGCaCAccCGGCUauggguccgcgUCAACGa -3'
miRNA:   3'- -CGUCC--UCAAGUG-GUu-GCCGA-----------AGUUGC- -5'
1474 5' -50.5 NC_001335.1 + 40348 0.71 0.710485
Target:  5'- gGCAGGA--UCGCCuGCGGCUUgAAg- -3'
miRNA:   3'- -CGUCCUcaAGUGGuUGCCGAAgUUgc -5'
1474 5' -50.5 NC_001335.1 + 4658 0.72 0.642726
Target:  5'- gGCGGGGcGUUCACCAACaacccgagGGUgUCGACu -3'
miRNA:   3'- -CGUCCU-CAAGUGGUUG--------CCGaAGUUGc -5'
1474 5' -50.5 NC_001335.1 + 40135 0.76 0.42526
Target:  5'- cCAGGAGUUCACCGGCcucGCccgCAACGu -3'
miRNA:   3'- cGUCCUCAAGUGGUUGc--CGaa-GUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.