miRNA display CGI


Results 1 - 20 of 21 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1477 5' -56.4 NC_001335.1 + 29431 0.66 0.674901
Target:  5'- gCGCAugUCGAUCaCCGgcauCCCgGCGCaGAc -3'
miRNA:   3'- -GCGUugAGCUAG-GGC----GGGaUGUGgCU- -5'
1477 5' -56.4 NC_001335.1 + 13597 0.66 0.664064
Target:  5'- gGCAgaACUCGAccaCCCGCau--CACCGAc -3'
miRNA:   3'- gCGU--UGAGCUa--GGGCGggauGUGGCU- -5'
1477 5' -56.4 NC_001335.1 + 39400 0.66 0.653199
Target:  5'- gGuCAGCUCGcgCUcauCGUCCU-CACCGAa -3'
miRNA:   3'- gC-GUUGAGCuaGG---GCGGGAuGUGGCU- -5'
1477 5' -56.4 NC_001335.1 + 48722 0.66 0.653199
Target:  5'- uGC-GCUUGAUguaUCCGCUCU-CACCGGg -3'
miRNA:   3'- gCGuUGAGCUA---GGGCGGGAuGUGGCU- -5'
1477 5' -56.4 NC_001335.1 + 50193 0.66 0.653199
Target:  5'- uGuCAGCUCGGUCCUGCUgcACAaCUGGg -3'
miRNA:   3'- gC-GUUGAGCUAGGGCGGgaUGU-GGCU- -5'
1477 5' -56.4 NC_001335.1 + 35077 0.66 0.653199
Target:  5'- cCGU-ACUCGA-CCgGgCCUGCACCa- -3'
miRNA:   3'- -GCGuUGAGCUaGGgCgGGAUGUGGcu -5'
1477 5' -56.4 NC_001335.1 + 16360 0.66 0.63142
Target:  5'- gGCGGCUgccuUGAUgCCGUCC-AUGCCGAg -3'
miRNA:   3'- gCGUUGA----GCUAgGGCGGGaUGUGGCU- -5'
1477 5' -56.4 NC_001335.1 + 5288 0.67 0.59878
Target:  5'- gCGCAGg-CGAUCUCGgUgagCUGCACCGAa -3'
miRNA:   3'- -GCGUUgaGCUAGGGCgG---GAUGUGGCU- -5'
1477 5' -56.4 NC_001335.1 + 17740 0.67 0.59878
Target:  5'- gGgGACUCGAUgCCCaggaaGCCCUucacuGCACCa- -3'
miRNA:   3'- gCgUUGAGCUA-GGG-----CGGGA-----UGUGGcu -5'
1477 5' -56.4 NC_001335.1 + 32890 0.67 0.587944
Target:  5'- gCGCGACUCGAuggcggUCCaGCaCUcCACCGAu -3'
miRNA:   3'- -GCGUUGAGCU------AGGgCGgGAuGUGGCU- -5'
1477 5' -56.4 NC_001335.1 + 3879 0.67 0.566388
Target:  5'- uGCAGC-CGAUUCCgGCUaCUACAgCCGAc -3'
miRNA:   3'- gCGUUGaGCUAGGG-CGG-GAUGU-GGCU- -5'
1477 5' -56.4 NC_001335.1 + 30432 0.68 0.523961
Target:  5'- cCGCAGCUCGAUCaaaaUGCUCUccUACUGGa -3'
miRNA:   3'- -GCGUUGAGCUAGg---GCGGGAu-GUGGCU- -5'
1477 5' -56.4 NC_001335.1 + 18860 0.68 0.5032
Target:  5'- cCGgGugUCGGUCuuGgUCUugGCCGAg -3'
miRNA:   3'- -GCgUugAGCUAGggCgGGAugUGGCU- -5'
1477 5' -56.4 NC_001335.1 + 40456 0.68 0.500116
Target:  5'- uGCuuCUUGAUCCCGUCCUugGucuugcaggucacgUCGAg -3'
miRNA:   3'- gCGuuGAGCUAGGGCGGGAugU--------------GGCU- -5'
1477 5' -56.4 NC_001335.1 + 1796 0.69 0.482804
Target:  5'- uGUAgaGCUUGGUgCCGCCgUACauGCCGAg -3'
miRNA:   3'- gCGU--UGAGCUAgGGCGGgAUG--UGGCU- -5'
1477 5' -56.4 NC_001335.1 + 47097 0.7 0.443271
Target:  5'- aCGCAACUCGAgCCgUGCCUUGaGCUGGu -3'
miRNA:   3'- -GCGUUGAGCUaGG-GCGGGAUgUGGCU- -5'
1477 5' -56.4 NC_001335.1 + 35775 0.7 0.414849
Target:  5'- uGCAGaggCGAUCaggaGCCgCUACACCGAc -3'
miRNA:   3'- gCGUUga-GCUAGgg--CGG-GAUGUGGCU- -5'
1477 5' -56.4 NC_001335.1 + 1251 0.7 0.414849
Target:  5'- uGCAGCUCcaccCCCGCCUccgACGCCGc -3'
miRNA:   3'- gCGUUGAGcua-GGGCGGGa--UGUGGCu -5'
1477 5' -56.4 NC_001335.1 + 15335 0.76 0.18263
Target:  5'- aCGCAACUgGGggaagCCgCGCCCU-CGCCGAg -3'
miRNA:   3'- -GCGUUGAgCUa----GG-GCGGGAuGUGGCU- -5'
1477 5' -56.4 NC_001335.1 + 40415 0.78 0.143138
Target:  5'- cCGCAGg-CGAUCCUGCCCgACAUCGAa -3'
miRNA:   3'- -GCGUUgaGCUAGGGCGGGaUGUGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.