miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1479 5' -55.3 NC_001335.1 + 16292 0.66 0.724479
Target:  5'- -gCAUCAAGGCagccgccuCGACGCuGGccccGACGCu -3'
miRNA:   3'- caGUAGUUCUG--------GCUGCGuCCc---CUGCG- -5'
1479 5' -55.3 NC_001335.1 + 39880 0.66 0.710595
Target:  5'- cGUCGUgCGAcguGACCagcuccgcuucguaGACGCcguAGGGGugGCc -3'
miRNA:   3'- -CAGUA-GUU---CUGG--------------CUGCG---UCCCCugCG- -5'
1479 5' -55.3 NC_001335.1 + 13520 0.66 0.703064
Target:  5'- aUCGUguAGucgacccgcGCCaACGCAGGGGAUGa -3'
miRNA:   3'- cAGUAguUC---------UGGcUGCGUCCCCUGCg -5'
1479 5' -55.3 NC_001335.1 + 31759 0.67 0.659494
Target:  5'- cGUCAUCAAGGCC--CGCuGGcacgaggccgcGGAUGCc -3'
miRNA:   3'- -CAGUAGUUCUGGcuGCGuCC-----------CCUGCG- -5'
1479 5' -55.3 NC_001335.1 + 49586 0.67 0.615512
Target:  5'- -aCAUCGcGGACUgGACGUAccGGGACGCg -3'
miRNA:   3'- caGUAGU-UCUGG-CUGCGUc-CCCUGCG- -5'
1479 5' -55.3 NC_001335.1 + 77 0.67 0.615512
Target:  5'- -aCAUCAGGGCUGuGCGCcuccAGGGcGCGUg -3'
miRNA:   3'- caGUAGUUCUGGC-UGCG----UCCCcUGCG- -5'
1479 5' -55.3 NC_001335.1 + 41684 0.68 0.571757
Target:  5'- -aCGUgGGGAUCGACGCcuGGGGCcgGCu -3'
miRNA:   3'- caGUAgUUCUGGCUGCGucCCCUG--CG- -5'
1479 5' -55.3 NC_001335.1 + 723 0.69 0.550141
Target:  5'- --gGUCGAGAa-GGCGCucGGGGGACGa -3'
miRNA:   3'- cagUAGUUCUggCUGCG--UCCCCUGCg -5'
1479 5' -55.3 NC_001335.1 + 50751 0.69 0.550141
Target:  5'- aGUCGUCGgccgGGGgCGGCGCAccuuGGGCGCg -3'
miRNA:   3'- -CAGUAGU----UCUgGCUGCGUcc--CCUGCG- -5'
1479 5' -55.3 NC_001335.1 + 14412 0.69 0.539426
Target:  5'- gGUCuugagCAAGGCCGGCGUAGGagcagcGGugccuGCGCa -3'
miRNA:   3'- -CAGua---GUUCUGGCUGCGUCC------CC-----UGCG- -5'
1479 5' -55.3 NC_001335.1 + 19114 0.69 0.518219
Target:  5'- cGUCAUCGAcaccGACCGGCGCgAGGagcaGAuCGCu -3'
miRNA:   3'- -CAGUAGUU----CUGGCUGCG-UCCc---CU-GCG- -5'
1479 5' -55.3 NC_001335.1 + 30954 0.7 0.487058
Target:  5'- -gCG-CGAGAUCGugGCAGGGuucACGCc -3'
miRNA:   3'- caGUaGUUCUGGCugCGUCCCc--UGCG- -5'
1479 5' -55.3 NC_001335.1 + 44386 0.71 0.437218
Target:  5'- aUCGUCAuccUCGAUGCcucGGGGGACGUa -3'
miRNA:   3'- cAGUAGUucuGGCUGCG---UCCCCUGCG- -5'
1479 5' -55.3 NC_001335.1 + 18524 0.72 0.347049
Target:  5'- cGUCAuccUCAAcGACgCGAaGCAGGGGcCGCg -3'
miRNA:   3'- -CAGU---AGUU-CUG-GCUgCGUCCCCuGCG- -5'
1479 5' -55.3 NC_001335.1 + 9098 0.75 0.238267
Target:  5'- --gGUCGAuGACCGACGCGGcGGcGCGCa -3'
miRNA:   3'- cagUAGUU-CUGGCUGCGUC-CCcUGCG- -5'
1479 5' -55.3 NC_001335.1 + 19647 1.1 0.000797
Target:  5'- gGUCAUCAAGACCGACGCAGGGGACGCc -3'
miRNA:   3'- -CAGUAGUUCUGGCUGCGUCCCCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.