miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
148 5' -55.3 AC_000006.1 + 7407 0.69 0.41941
Target:  5'- uGAGGUCCUCGGGgCauuGCagGCCGUGCu -3'
miRNA:   3'- cCUUUAGGGGCCCgGc--UGa-UGGCAUG- -5'
148 5' -55.3 AC_000006.1 + 11089 0.66 0.588329
Target:  5'- aGGAGGUggCCCUGGGCCuGAUgcacCUGUGg -3'
miRNA:   3'- -CCUUUA--GGGGCCCGG-CUGau--GGCAUg -5'
148 5' -55.3 AC_000006.1 + 17574 0.66 0.610774
Target:  5'- -----cCUCCGGuGgCGACcGCCGUGCg -3'
miRNA:   3'- ccuuuaGGGGCC-CgGCUGaUGGCAUG- -5'
148 5' -55.3 AC_000006.1 + 18188 0.67 0.553869
Target:  5'- gGGAGcgCCCUuggGGGCaaGGCUguuguaaGCCGUGCc -3'
miRNA:   3'- -CCUUuaGGGG---CCCGg-CUGA-------UGGCAUG- -5'
148 5' -55.3 AC_000006.1 + 24650 0.68 0.500758
Target:  5'- aGGAucgcgCCCUGGGUgaUGACgcagGCCGUGa -3'
miRNA:   3'- -CCUuua--GGGGCCCG--GCUGa---UGGCAUg -5'
148 5' -55.3 AC_000006.1 + 25687 1.12 0.000407
Target:  5'- aGGAAAUCCCCGGGCCGACUACCGUACu -3'
miRNA:   3'- -CCUUUAGGGGCCCGGCUGAUGGCAUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.