miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1480 3' -54.9 NC_001335.1 + 25978 0.66 0.761675
Target:  5'- gCUGaUCCUG-UCCaccgucguaucggUGGCCGGCAACg- -3'
miRNA:   3'- -GGCaAGGGCaAGG-------------ACCGGCUGUUGag -5'
1480 3' -54.9 NC_001335.1 + 6054 0.66 0.752448
Target:  5'- uCCGUaCgCGgacuucgCgCUGGCCGGCuACUCg -3'
miRNA:   3'- -GGCAaGgGCaa-----G-GACCGGCUGuUGAG- -5'
1480 3' -54.9 NC_001335.1 + 20226 0.66 0.742081
Target:  5'- aCCGggUUCGUccgagggauggUCCaacUGGCCGGCGACg- -3'
miRNA:   3'- -GGCaaGGGCA-----------AGG---ACCGGCUGUUGag -5'
1480 3' -54.9 NC_001335.1 + 46866 0.66 0.721028
Target:  5'- uCCag-CCCGUaCUUGGCCauCAGCUCg -3'
miRNA:   3'- -GGcaaGGGCAaGGACCGGcuGUUGAG- -5'
1480 3' -54.9 NC_001335.1 + 40063 0.67 0.710364
Target:  5'- gCGaggCCgGUgaacUCCUGGCCGugGACc- -3'
miRNA:   3'- gGCaa-GGgCA----AGGACCGGCugUUGag -5'
1480 3' -54.9 NC_001335.1 + 1809 0.67 0.699623
Target:  5'- aCGUauucCCCGgccgUCCUGGC-GACGGCg- -3'
miRNA:   3'- gGCAa---GGGCa---AGGACCGgCUGUUGag -5'
1480 3' -54.9 NC_001335.1 + 41404 0.67 0.699623
Target:  5'- gCCGacUUCCCGgugCCggGGCCGGCGc--- -3'
miRNA:   3'- -GGC--AAGGGCaa-GGa-CCGGCUGUugag -5'
1480 3' -54.9 NC_001335.1 + 2415 0.67 0.688818
Target:  5'- -aGUUCCUGUcgccggCCUaGCCGGCccAGCUCa -3'
miRNA:   3'- ggCAAGGGCAa-----GGAcCGGCUG--UUGAG- -5'
1480 3' -54.9 NC_001335.1 + 2542 0.67 0.667055
Target:  5'- gUCGUUCCCGcgCUugaugUGGUCGACA--UCg -3'
miRNA:   3'- -GGCAAGGGCaaGG-----ACCGGCUGUugAG- -5'
1480 3' -54.9 NC_001335.1 + 2256 0.67 0.656119
Target:  5'- aCCGc-CCCacUUCgUGGCCGACAGC-Cg -3'
miRNA:   3'- -GGCaaGGGc-AAGgACCGGCUGUUGaG- -5'
1480 3' -54.9 NC_001335.1 + 50531 0.68 0.601312
Target:  5'- aCCGUgCCCGa-CgUGGCCGuCAugUCu -3'
miRNA:   3'- -GGCAaGGGCaaGgACCGGCuGUugAG- -5'
1480 3' -54.9 NC_001335.1 + 50836 0.7 0.525886
Target:  5'- aCGcgCCCaagGUgcgCCgcccccGGCCGACGACUCg -3'
miRNA:   3'- gGCaaGGG---CAa--GGa-----CCGGCUGUUGAG- -5'
1480 3' -54.9 NC_001335.1 + 1970 0.7 0.515373
Target:  5'- ---aUCCaCGgcggcgUCCUGGUCGAgGACUCa -3'
miRNA:   3'- ggcaAGG-GCa-----AGGACCGGCUgUUGAG- -5'
1480 3' -54.9 NC_001335.1 + 17237 0.7 0.515373
Target:  5'- aCCGcgCCUGcgaCCUGGCCGAgGGCcgUCg -3'
miRNA:   3'- -GGCaaGGGCaa-GGACCGGCUgUUG--AG- -5'
1480 3' -54.9 NC_001335.1 + 7167 0.71 0.474242
Target:  5'- gUGUUCuUCGUcuggUCCUGGCUGACGGC-Cg -3'
miRNA:   3'- gGCAAG-GGCA----AGGACCGGCUGUUGaG- -5'
1480 3' -54.9 NC_001335.1 + 23901 0.71 0.4543
Target:  5'- aCGagCCCGgugaucgUCUUGGUCGACAACg- -3'
miRNA:   3'- gGCaaGGGCa------AGGACCGGCUGUUGag -5'
1480 3' -54.9 NC_001335.1 + 22028 0.71 0.425265
Target:  5'- cCCGgauggCCUGUucgguguagUCCUGGCCGA-AGCUCc -3'
miRNA:   3'- -GGCaa---GGGCA---------AGGACCGGCUgUUGAG- -5'
1480 3' -54.9 NC_001335.1 + 35132 0.74 0.305661
Target:  5'- aCGgggUCUCGUUCuCUGG-CGGCGACUCu -3'
miRNA:   3'- gGCa--AGGGCAAG-GACCgGCUGUUGAG- -5'
1480 3' -54.9 NC_001335.1 + 38004 0.74 0.290111
Target:  5'- gCUGUUCCugggcuaccgcaaCGUgaacaUCCUGGCCGACGGCg- -3'
miRNA:   3'- -GGCAAGG-------------GCA-----AGGACCGGCUGUUGag -5'
1480 3' -54.9 NC_001335.1 + 19935 1.07 0.00175
Target:  5'- gCCGUUCCCGUUCCUGGCCGACAACUa -3'
miRNA:   3'- -GGCAAGGGCAAGGACCGGCUGUUGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.