miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1481 5' -58 NC_001335.1 + 20977 0.66 0.509647
Target:  5'- -cCGAGGACCGaCGugCCGaCGcgaucUCCGa- -3'
miRNA:   3'- uaGUUCCUGGC-GCugGGC-GU-----AGGCaa -5'
1481 5' -58 NC_001335.1 + 4904 0.66 0.488946
Target:  5'- -gCAAGG-CCGCuGGCCCGCcucggggcAUCCGc- -3'
miRNA:   3'- uaGUUCCuGGCG-CUGGGCG--------UAGGCaa -5'
1481 5' -58 NC_001335.1 + 13573 0.67 0.478744
Target:  5'- ----cGGGCCGCGACCuuguuCGCGUUCGc- -3'
miRNA:   3'- uaguuCCUGGCGCUGG-----GCGUAGGCaa -5'
1481 5' -58 NC_001335.1 + 26766 0.67 0.478744
Target:  5'- --gGAGGACCGCGcugauGCCCccgagaGCAUCCa-- -3'
miRNA:   3'- uagUUCCUGGCGC-----UGGG------CGUAGGcaa -5'
1481 5' -58 NC_001335.1 + 43353 0.67 0.458661
Target:  5'- cAUCGAgcuGGACgGC-AUCCGCGUCCGa- -3'
miRNA:   3'- -UAGUU---CCUGgCGcUGGGCGUAGGCaa -5'
1481 5' -58 NC_001335.1 + 6950 0.69 0.36565
Target:  5'- cUCAAGGGCUGgGGCaaGgAUCCGUUc -3'
miRNA:   3'- uAGUUCCUGGCgCUGggCgUAGGCAA- -5'
1481 5' -58 NC_001335.1 + 34413 0.69 0.36565
Target:  5'- gGUgGAGuGGCCaGCGGCCCGCugCCGUUc -3'
miRNA:   3'- -UAgUUC-CUGG-CGCUGGGCGuaGGCAA- -5'
1481 5' -58 NC_001335.1 + 8232 0.69 0.332266
Target:  5'- cUCAAGGACCGCGuccucgagucGCUCGCAgUCGa- -3'
miRNA:   3'- uAGUUCCUGGCGC----------UGGGCGUaGGCaa -5'
1481 5' -58 NC_001335.1 + 1756 0.7 0.324278
Target:  5'- gGUCAAGGACCGCGuCaCCGUGaCCa-- -3'
miRNA:   3'- -UAGUUCCUGGCGCuG-GGCGUaGGcaa -5'
1481 5' -58 NC_001335.1 + 4267 0.72 0.233387
Target:  5'- -gCGAGGGCUGaaccgGACCCGUGUCCGg- -3'
miRNA:   3'- uaGUUCCUGGCg----CUGGGCGUAGGCaa -5'
1481 5' -58 NC_001335.1 + 18238 0.73 0.193942
Target:  5'- gAUCAAGGACCGCGAggagucgaagaaCgCGCuGUCCGUc -3'
miRNA:   3'- -UAGUUCCUGGCGCU------------GgGCG-UAGGCAa -5'
1481 5' -58 NC_001335.1 + 50100 0.74 0.169454
Target:  5'- cGUCAAGGAUUGCGACCguCGCAaggcUCCGa- -3'
miRNA:   3'- -UAGUUCCUGGCGCUGG--GCGU----AGGCaa -5'
1481 5' -58 NC_001335.1 + 20057 1.03 0.001261
Target:  5'- cAUCAAGGACCGCGACCCGCAUCCGUUc -3'
miRNA:   3'- -UAGUUCCUGGCGCUGGGCGUAGGCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.