Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14816 | 5' | -55 | NC_003603.1 | + | 1105 | 0.65 | 0.118127 |
Target: 5'- --cGCUCCag-CuGCAGGCGcGUACCa -3' miRNA: 3'- ccaUGAGGgaaGuUGUCCGC-CGUGGg -5' |
|||||||
14816 | 5' | -55 | NC_003603.1 | + | 734 | 0.67 | 0.086477 |
Target: 5'- cGGUugcccaGCUCCCUgUUGGCggGGGUGGCagcuugccACCCa -3' miRNA: 3'- -CCA------UGAGGGA-AGUUG--UCCGCCG--------UGGG- -5' |
|||||||
14816 | 5' | -55 | NC_003603.1 | + | 3732 | 0.75 | 0.017928 |
Target: 5'- cGGUugUUCCacgugggaAGCAGGCucGGCACCCa -3' miRNA: 3'- -CCAugAGGGaag-----UUGUCCG--CCGUGGG- -5' |
|||||||
14816 | 5' | -55 | NC_003603.1 | + | 3890 | 1.15 | 0.000006 |
Target: 5'- uGGUACUCCCUUCAACAGGCGGCACCCa -3' miRNA: 3'- -CCAUGAGGGAAGUUGUCCGCCGUGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home