miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14822 5' -54.9 NC_003607.1 + 1197 0.66 0.141028
Target:  5'- uGGCAuUGCCcUCGuCAcc-GCCGCGg -3'
miRNA:   3'- cCCGUuACGGuAGCuGUaucCGGCGC- -5'
14822 5' -54.9 NC_003607.1 + 2930 0.67 0.115268
Target:  5'- aGGGuCAAagGUCAaCGugGUAGGUgGCGa -3'
miRNA:   3'- -CCC-GUUa-CGGUaGCugUAUCCGgCGC- -5'
14822 5' -54.9 NC_003607.1 + 2038 0.72 0.045251
Target:  5'- -uGUAucgGCCAUCu-CGUGGGCCGCGg -3'
miRNA:   3'- ccCGUua-CGGUAGcuGUAUCCGGCGC- -5'
14822 5' -54.9 NC_003607.1 + 1212 1.11 0.000021
Target:  5'- aGGGCAAUGCCAUCGACAUAGGCCGCGu -3'
miRNA:   3'- -CCCGUUACGGUAGCUGUAUCCGGCGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.