miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1483 3' -55.8 NC_001335.1 + 51659 0.66 0.723086
Target:  5'- gGCgGUaGGCGGAUCcGAGaGGAUCGUg -3'
miRNA:   3'- -CGgCAcUCGCCUAGcUUCcUCUGGCG- -5'
1483 3' -55.8 NC_001335.1 + 32629 0.66 0.701907
Target:  5'- gGCCG-GcGCGGAUCcaccGGAGcCUGCg -3'
miRNA:   3'- -CGGCaCuCGCCUAGcuu-CCUCuGGCG- -5'
1483 3' -55.8 NC_001335.1 + 42022 0.66 0.691213
Target:  5'- uGCCcucGGGUGGAucUCGGAucGGccAGGCCGCa -3'
miRNA:   3'- -CGGca-CUCGCCU--AGCUU--CC--UCUGGCG- -5'
1483 3' -55.8 NC_001335.1 + 10912 0.66 0.691213
Target:  5'- aGCCGcucGGGUGGcgaaGAAGGAcGCCGUa -3'
miRNA:   3'- -CGGCa--CUCGCCuag-CUUCCUcUGGCG- -5'
1483 3' -55.8 NC_001335.1 + 40220 0.66 0.680463
Target:  5'- aGCCGaccgucUGgacccacaAGCGGAUCGAcccGGAGAgcccggauccCCGCa -3'
miRNA:   3'- -CGGC------AC--------UCGCCUAGCUu--CCUCU----------GGCG- -5'
1483 3' -55.8 NC_001335.1 + 28454 0.67 0.669669
Target:  5'- cGCCG-GuGCGuaccuccuGAUCGAGGGGGAggGCg -3'
miRNA:   3'- -CGGCaCuCGC--------CUAGCUUCCUCUggCG- -5'
1483 3' -55.8 NC_001335.1 + 5334 0.67 0.65884
Target:  5'- cGCCGcucaGcGUGGAUCGGGuGGAGcauGCCGUc -3'
miRNA:   3'- -CGGCa---CuCGCCUAGCUU-CCUC---UGGCG- -5'
1483 3' -55.8 NC_001335.1 + 12919 0.67 0.65884
Target:  5'- -aCGUGAGCGcGAgCGAccGAcACCGCg -3'
miRNA:   3'- cgGCACUCGC-CUaGCUucCUcUGGCG- -5'
1483 3' -55.8 NC_001335.1 + 18832 0.67 0.65884
Target:  5'- cGCCGUGGccGUGGGagGAacugcccaAGGAGacGCUGCg -3'
miRNA:   3'- -CGGCACU--CGCCUagCU--------UCCUC--UGGCG- -5'
1483 3' -55.8 NC_001335.1 + 27354 0.67 0.626247
Target:  5'- cUCGUGuagccGGCGGAUCaGAucuGGGAuggcaccgugcaGACCGCa -3'
miRNA:   3'- cGGCAC-----UCGCCUAG-CU---UCCU------------CUGGCG- -5'
1483 3' -55.8 NC_001335.1 + 46552 0.68 0.604529
Target:  5'- cGCCGgucGUGGAUCGcAGGcuucgcccAGGCCGUc -3'
miRNA:   3'- -CGGCacuCGCCUAGCuUCC--------UCUGGCG- -5'
1483 3' -55.8 NC_001335.1 + 32815 0.68 0.561434
Target:  5'- cCCGUGGGUGGucgUGAAGG-GugCGg -3'
miRNA:   3'- cGGCACUCGCCua-GCUUCCuCugGCg -5'
1483 3' -55.8 NC_001335.1 + 26429 0.68 0.55078
Target:  5'- --aGUGGgcuGCGGcAUCGGAGGAGG-CGCg -3'
miRNA:   3'- cggCACU---CGCC-UAGCUUCCUCUgGCG- -5'
1483 3' -55.8 NC_001335.1 + 14999 0.69 0.540189
Target:  5'- uCUGUGAGUGGcgggaggaGggGGAGGCCa- -3'
miRNA:   3'- cGGCACUCGCCuag-----CuuCCUCUGGcg -5'
1483 3' -55.8 NC_001335.1 + 45293 0.7 0.439062
Target:  5'- cGCUGUcGGCGaaGUCcgaccuGAAGGAGACCGCc -3'
miRNA:   3'- -CGGCAcUCGCc-UAG------CUUCCUCUGGCG- -5'
1483 3' -55.8 NC_001335.1 + 31518 0.72 0.383812
Target:  5'- -aCGUGgaAGCGGuccUCGAGGGucACCGCa -3'
miRNA:   3'- cgGCAC--UCGCCu--AGCUUCCucUGGCG- -5'
1483 3' -55.8 NC_001335.1 + 21828 1.13 0.000525
Target:  5'- cGCCGUGAGCGGAUCGAAGGAGACCGCc -3'
miRNA:   3'- -CGGCACUCGCCUAGCUUCCUCUGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.