Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1484 | 5' | -55.6 | NC_001335.1 | + | 21996 | 1.08 | 0.001032 |
Target: 5'- gGUCACGAUGGAGAACGCUCUCGGCCUg -3' miRNA: 3'- -CAGUGCUACCUCUUGCGAGAGCCGGA- -5' |
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1484 | 5' | -55.6 | NC_001335.1 | + | 19964 | 0.67 | 0.59863 |
Target: 5'- gGUCACGAUGGuguucagccgguucGGGACGUUCUaCGacaccGCCa -3' miRNA: 3'- -CAGUGCUACC--------------UCUUGCGAGA-GC-----CGGa -5' |
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1484 | 5' | -55.6 | NC_001335.1 | + | 7853 | 0.67 | 0.601936 |
Target: 5'- aGUCcaACGAcUGGAccGCGCUCgUCGGCUg -3' miRNA: 3'- -CAG--UGCU-ACCUcuUGCGAG-AGCCGGa -5' |
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1484 | 5' | -55.6 | NC_001335.1 | + | 10206 | 0.67 | 0.620703 |
Target: 5'- uUCGCGAagUGGAGAugGCagcacgccgacagaUCaUCGGCgCUg -3' miRNA: 3'- cAGUGCU--ACCUCUugCG--------------AG-AGCCG-GA- -5' |
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1484 | 5' | -55.6 | NC_001335.1 | + | 52211 | 0.66 | 0.690114 |
Target: 5'- --uGCGAUGcGAGAGCGCcgCggcacgCGGCUa -3' miRNA: 3'- cagUGCUAC-CUCUUGCGa-Ga-----GCCGGa -5' |
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1484 | 5' | -55.6 | NC_001335.1 | + | 37790 | 0.66 | 0.668191 |
Target: 5'- cUCACGu--GAGAACGCUgUUCGcGCCg -3' miRNA: 3'- cAGUGCuacCUCUUGCGA-GAGC-CGGa -5' |
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1484 | 5' | -55.6 | NC_001335.1 | + | 1694 | 0.68 | 0.569028 |
Target: 5'- cGUCcuCGA-GGAGGGCGCgUUCGGUCg -3' miRNA: 3'- -CAGu-GCUaCCUCUUGCGaGAGCCGGa -5' |
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1484 | 5' | -55.6 | NC_001335.1 | + | 12321 | 0.68 | 0.525909 |
Target: 5'- cGUUGCaGUGGAaGGCGUaCUCGGCCUc -3' miRNA: 3'- -CAGUGcUACCUcUUGCGaGAGCCGGA- -5' |
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1484 | 5' | -55.6 | NC_001335.1 | + | 41235 | 0.69 | 0.504807 |
Target: 5'- --gACGAgaucGAGAACGCUCU-GGCCg -3' miRNA: 3'- cagUGCUac--CUCUUGCGAGAgCCGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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