Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1486 | 3' | -56.7 | NC_001335.1 | + | 22411 | 1.09 | 0.000521 |
Target: 5'- aAUGCAGCUACCGGCAUCCAGGACACCu -3' miRNA: 3'- -UACGUCGAUGGCCGUAGGUCCUGUGG- -5' |
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1486 | 3' | -56.7 | NC_001335.1 | + | 12554 | 0.79 | 0.094411 |
Target: 5'- uUGguGUUGCgCGGUuUCCGGGGCACCu -3' miRNA: 3'- uACguCGAUG-GCCGuAGGUCCUGUGG- -5' |
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1486 | 3' | -56.7 | NC_001335.1 | + | 38162 | 0.77 | 0.121996 |
Target: 5'- -cGCAGCUACCG---UCCAGuGACGCCa -3' miRNA: 3'- uaCGUCGAUGGCcguAGGUC-CUGUGG- -5' |
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1486 | 3' | -56.7 | NC_001335.1 | + | 36985 | 0.72 | 0.268053 |
Target: 5'- -gGCGGUcAUCGGCuacAUCgGGGACACCc -3' miRNA: 3'- uaCGUCGaUGGCCG---UAGgUCCUGUGG- -5' |
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1486 | 3' | -56.7 | NC_001335.1 | + | 36693 | 0.71 | 0.288639 |
Target: 5'- gGUGCAGgUagucgacugGCCGGCGgucgugguugcccUCguGGACACCa -3' miRNA: 3'- -UACGUCgA---------UGGCCGU-------------AGguCCUGUGG- -5' |
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1486 | 3' | -56.7 | NC_001335.1 | + | 51830 | 0.71 | 0.327812 |
Target: 5'- uAUGCgcggcacgGGCUGCCGGgacuGUCCAGcGugACCa -3' miRNA: 3'- -UACG--------UCGAUGGCCg---UAGGUC-CugUGG- -5' |
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1486 | 3' | -56.7 | NC_001335.1 | + | 16557 | 0.69 | 0.387747 |
Target: 5'- uGUGCucGCUACCGGCAcgcaggcguUCCu-GACGCUg -3' miRNA: 3'- -UACGu-CGAUGGCCGU---------AGGucCUGUGG- -5' |
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1486 | 3' | -56.7 | NC_001335.1 | + | 1184 | 0.69 | 0.406145 |
Target: 5'- uUGCGuGCU-CCGGU-UCCGGGACcgggGCCg -3' miRNA: 3'- uACGU-CGAuGGCCGuAGGUCCUG----UGG- -5' |
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1486 | 3' | -56.7 | NC_001335.1 | + | 37275 | 0.69 | 0.425082 |
Target: 5'- gAUGCAGCUccccgaggacgAgCGGUAUCCcaaGGGGCcucGCCa -3' miRNA: 3'- -UACGUCGA-----------UgGCCGUAGG---UCCUG---UGG- -5' |
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1486 | 3' | -56.7 | NC_001335.1 | + | 17627 | 0.69 | 0.425082 |
Target: 5'- -gGCcaAGgaGCUGGCGUCCAGcGugGCUg -3' miRNA: 3'- uaCG--UCgaUGGCCGUAGGUC-CugUGG- -5' |
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1486 | 3' | -56.7 | NC_001335.1 | + | 21269 | 0.69 | 0.425082 |
Target: 5'- aGUGCGGCUuUCGGCAcgucgacuggcUCCGGGA-GCUg -3' miRNA: 3'- -UACGUCGAuGGCCGU-----------AGGUCCUgUGG- -5' |
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1486 | 3' | -56.7 | NC_001335.1 | + | 29007 | 0.68 | 0.46448 |
Target: 5'- -gGCGGCUGCCGGUGgacagCuCGcGGACAUa -3' miRNA: 3'- uaCGUCGAUGGCCGUa----G-GU-CCUGUGg -5' |
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1486 | 3' | -56.7 | NC_001335.1 | + | 42410 | 0.68 | 0.474625 |
Target: 5'- -cGCGGCUcgcGCCGGUcggccgAUUCAcGACGCCu -3' miRNA: 3'- uaCGUCGA---UGGCCG------UAGGUcCUGUGG- -5' |
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1486 | 3' | -56.7 | NC_001335.1 | + | 13196 | 0.68 | 0.478714 |
Target: 5'- -aGCGGaccaggccgucgaaUACCGGCAUCCcGGcCAUCg -3' miRNA: 3'- uaCGUCg-------------AUGGCCGUAGGuCCuGUGG- -5' |
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1486 | 3' | -56.7 | NC_001335.1 | + | 13207 | 0.67 | 0.495239 |
Target: 5'- gAUGCAGgU-CUGGUA-CCGGG-CACCg -3' miRNA: 3'- -UACGUCgAuGGCCGUaGGUCCuGUGG- -5' |
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1486 | 3' | -56.7 | NC_001335.1 | + | 41415 | 0.67 | 0.516251 |
Target: 5'- gGUGCcGggGCCGGCGcagaCCAGGACuagcugGCCu -3' miRNA: 3'- -UACGuCgaUGGCCGUa---GGUCCUG------UGG- -5' |
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1486 | 3' | -56.7 | NC_001335.1 | + | 38759 | 0.67 | 0.516251 |
Target: 5'- -cGCAGCggagACCGGCG---AGGGCuucGCCg -3' miRNA: 3'- uaCGUCGa---UGGCCGUaggUCCUG---UGG- -5' |
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1486 | 3' | -56.7 | NC_001335.1 | + | 8560 | 0.67 | 0.516251 |
Target: 5'- gAUGCAGCaacUGCUGGC-UCaCGucGGAUACCc -3' miRNA: 3'- -UACGUCG---AUGGCCGuAG-GU--CCUGUGG- -5' |
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1486 | 3' | -56.7 | NC_001335.1 | + | 630 | 0.67 | 0.52689 |
Target: 5'- -cGCGGUgACgCGGCAuauUCCAGGcCGCg -3' miRNA: 3'- uaCGUCGaUG-GCCGU---AGGUCCuGUGg -5' |
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1486 | 3' | -56.7 | NC_001335.1 | + | 29225 | 0.67 | 0.52689 |
Target: 5'- uUGCGGUcGCCcgacagcGCcgCCAGGACGCg -3' miRNA: 3'- uACGUCGaUGGc------CGuaGGUCCUGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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