Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1487 | 3' | -56.2 | NC_001335.1 | + | 2168 | 0.68 | 0.533635 |
Target: 5'- cGUACUGacCCG-GCUGuCGGCCACgAAg -3' miRNA: 3'- -CAUGAU--GGCaCGGCuGCCGGUGgUUg -5' |
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1487 | 3' | -56.2 | NC_001335.1 | + | 3639 | 0.67 | 0.544334 |
Target: 5'- -aACUACuuggggucgaCGUGgagaUGACGGUCACCGACa -3' miRNA: 3'- caUGAUG----------GCACg---GCUGCCGGUGGUUG- -5' |
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1487 | 3' | -56.2 | NC_001335.1 | + | 4150 | 0.68 | 0.502017 |
Target: 5'- -gGCUGCCucGCCGGuCGGCaugugaACCAACu -3' miRNA: 3'- caUGAUGGcaCGGCU-GCCGg-----UGGUUG- -5' |
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1487 | 3' | -56.2 | NC_001335.1 | + | 5601 | 0.66 | 0.658188 |
Target: 5'- gGUGC-GCCG-GCCGuaGCGGCaggcaccguacgcaGCCAGCg -3' miRNA: 3'- -CAUGaUGGCaCGGC--UGCCGg-------------UGGUUG- -5' |
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1487 | 3' | -56.2 | NC_001335.1 | + | 6028 | 0.71 | 0.350526 |
Target: 5'- -cGCUGCCGgguaguUGCCGAUGggcuGCCACCggUa -3' miRNA: 3'- caUGAUGGC------ACGGCUGC----CGGUGGuuG- -5' |
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1487 | 3' | -56.2 | NC_001335.1 | + | 7879 | 0.77 | 0.156695 |
Target: 5'- -gGCUGCCGUGUcagCGACGGCCugCu-- -3' miRNA: 3'- caUGAUGGCACG---GCUGCCGGugGuug -5' |
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1487 | 3' | -56.2 | NC_001335.1 | + | 7955 | 0.66 | 0.642771 |
Target: 5'- -aGCagGCCGUcGCUGAcaCGGCaGCCGACg -3' miRNA: 3'- caUGa-UGGCA-CGGCU--GCCGgUGGUUG- -5' |
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1487 | 3' | -56.2 | NC_001335.1 | + | 8620 | 0.66 | 0.619619 |
Target: 5'- uUGCUGCaucucucucgggaCGgugacGCCGAUGGCCucugGCCGGCg -3' miRNA: 3'- cAUGAUG-------------GCa----CGGCUGCCGG----UGGUUG- -5' |
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1487 | 3' | -56.2 | NC_001335.1 | + | 11893 | 0.68 | 0.491658 |
Target: 5'- uUGgaGCCgGUGCCGucCGGguCCACCAGCg -3' miRNA: 3'- cAUgaUGG-CACGGCu-GCC--GGUGGUUG- -5' |
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1487 | 3' | -56.2 | NC_001335.1 | + | 14392 | 0.69 | 0.471247 |
Target: 5'- gGUGCUACCGguugGaCGAgcguCGGCCacACCAGCc -3' miRNA: 3'- -CAUGAUGGCa---CgGCU----GCCGG--UGGUUG- -5' |
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1487 | 3' | -56.2 | NC_001335.1 | + | 17030 | 0.71 | 0.350526 |
Target: 5'- -aGC-AUCGUGCCGAgCGuGCuCGCCAGCg -3' miRNA: 3'- caUGaUGGCACGGCU-GC-CG-GUGGUUG- -5' |
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1487 | 3' | -56.2 | NC_001335.1 | + | 17230 | 0.68 | 0.502017 |
Target: 5'- cUGCgACCuG-GCCGAgGGCCgucGCCAGCg -3' miRNA: 3'- cAUGaUGG-CaCGGCUgCCGG---UGGUUG- -5' |
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1487 | 3' | -56.2 | NC_001335.1 | + | 17618 | 0.73 | 0.273718 |
Target: 5'- --cUUACCGgccugcagGCCGAUGGCCAUCAGg -3' miRNA: 3'- cauGAUGGCa-------CGGCUGCCGGUGGUUg -5' |
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1487 | 3' | -56.2 | NC_001335.1 | + | 21968 | 0.66 | 0.664782 |
Target: 5'- aUGC-GCCGUcagcGCCGAUGGCCuCUAGu -3' miRNA: 3'- cAUGaUGGCA----CGGCUGCCGGuGGUUg -5' |
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1487 | 3' | -56.2 | NC_001335.1 | + | 22682 | 1.09 | 0.00075 |
Target: 5'- gGUACUACCGUGCCGACGGCCACCAACu -3' miRNA: 3'- -CAUGAUGGCACGGCUGCCGGUGGUUG- -5' |
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1487 | 3' | -56.2 | NC_001335.1 | + | 23112 | 0.77 | 0.151185 |
Target: 5'- ----gGCCGUGCCGGCGGUCAgagcgaagaucgauCCAGCa -3' miRNA: 3'- caugaUGGCACGGCUGCCGGU--------------GGUUG- -5' |
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1487 | 3' | -56.2 | NC_001335.1 | + | 26593 | 0.67 | 0.576816 |
Target: 5'- ----gACCGaGCCGaACGGCCuugaGCCGGCc -3' miRNA: 3'- caugaUGGCaCGGC-UGCCGG----UGGUUG- -5' |
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1487 | 3' | -56.2 | NC_001335.1 | + | 26686 | 0.67 | 0.555102 |
Target: 5'- -aACUACaucGCCGACGGCCGgcUCAAg -3' miRNA: 3'- caUGAUGgcaCGGCUGCCGGU--GGUUg -5' |
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1487 | 3' | -56.2 | NC_001335.1 | + | 29032 | 0.68 | 0.512469 |
Target: 5'- -gGCUACauCGUcaacgcgauggGCCGGCGGCUGCCggUg -3' miRNA: 3'- caUGAUG--GCA-----------CGGCUGCCGGUGGuuG- -5' |
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1487 | 3' | -56.2 | NC_001335.1 | + | 30035 | 0.67 | 0.576816 |
Target: 5'- ----cGCCGgccucgaaggGCCGGgGGuCCACCAGCu -3' miRNA: 3'- caugaUGGCa---------CGGCUgCC-GGUGGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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