miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1487 5' -52.5 NC_001335.1 + 5686 0.67 0.785305
Target:  5'- aGGGCGucGAGcaggugcucGCGGCCAgGCAGAGUGCCg -3'
miRNA:   3'- aCCUGC--UUC---------CGUUGGU-CGUCUUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 38354 0.67 0.785305
Target:  5'- cGGGCu--GGcCGGCCgAGCGGAACuaaGCCg -3'
miRNA:   3'- aCCUGcuuCC-GUUGG-UCGUCUUG---UGG- -5'
1487 5' -52.5 NC_001335.1 + 19048 0.67 0.785305
Target:  5'- gGGACGuucGGGgggaaCGGCCAGgGGAaguucgGCACCu -3'
miRNA:   3'- aCCUGCu--UCC-----GUUGGUCgUCU------UGUGG- -5'
1487 5' -52.5 NC_001335.1 + 38053 0.67 0.785305
Target:  5'- -cGACGGugGGGC--UCAGCGGAGC-CCa -3'
miRNA:   3'- acCUGCU--UCCGuuGGUCGUCUUGuGG- -5'
1487 5' -52.5 NC_001335.1 + 45557 0.67 0.78429
Target:  5'- aGGACG-AGGCcaucaagGAUCuGCGGAagugguuccGCGCCg -3'
miRNA:   3'- aCCUGCuUCCG-------UUGGuCGUCU---------UGUGG- -5'
1487 5' -52.5 NC_001335.1 + 20291 0.67 0.775078
Target:  5'- cGGACGAAcccGGuCAGCCAcgaaccGCcGAACGCg -3'
miRNA:   3'- aCCUGCUU---CC-GUUGGU------CGuCUUGUGg -5'
1487 5' -52.5 NC_001335.1 + 1115 0.67 0.775078
Target:  5'- cGGAacCGGAGcacGCAACC-GCAGAgGCGCUg -3'
miRNA:   3'- aCCU--GCUUC---CGUUGGuCGUCU-UGUGG- -5'
1487 5' -52.5 NC_001335.1 + 35255 0.67 0.764694
Target:  5'- aGGGCaccAAGGuCAucguCCAGCGGGACgagACCa -3'
miRNA:   3'- aCCUGc--UUCC-GUu---GGUCGUCUUG---UGG- -5'
1487 5' -52.5 NC_001335.1 + 41757 0.67 0.764694
Target:  5'- -cGACGuauGGGaaguGGCuCAGCAGAACAUCu -3'
miRNA:   3'- acCUGCu--UCCg---UUG-GUCGUCUUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 15263 0.68 0.758395
Target:  5'- uUGGACGAGGaGCcggauccccguauCCGcGCAGAGCugUa -3'
miRNA:   3'- -ACCUGCUUC-CGuu-----------GGU-CGUCUUGugG- -5'
1487 5' -52.5 NC_001335.1 + 24215 0.68 0.753107
Target:  5'- gGGGCuuuuugcguuucaGGAGGUcuuGGCCAGCuuGGACAUCg -3'
miRNA:   3'- aCCUG-------------CUUCCG---UUGGUCGu-CUUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 24913 0.68 0.753107
Target:  5'- cGGAUcgagcaGAAGGCAGCCGaugagcgcgacGUAGAggcgcugACGCCu -3'
miRNA:   3'- aCCUG------CUUCCGUUGGU-----------CGUCU-------UGUGG- -5'
1487 5' -52.5 NC_001335.1 + 17223 0.68 0.753107
Target:  5'- cUGGcCGAGGGCcgucGCCAGCgccGGGAUgugcgggGCCa -3'
miRNA:   3'- -ACCuGCUUCCGu---UGGUCG---UCUUG-------UGG- -5'
1487 5' -52.5 NC_001335.1 + 30308 0.68 0.743509
Target:  5'- aGGACGAagccuGGGUgguGCCGGUGGAGCu-- -3'
miRNA:   3'- aCCUGCU-----UCCGu--UGGUCGUCUUGugg -5'
1487 5' -52.5 NC_001335.1 + 46691 0.68 0.743509
Target:  5'- cUGGuCGAucauGCAGCC-GCAGAugauGCGCCu -3'
miRNA:   3'- -ACCuGCUuc--CGUUGGuCGUCU----UGUGG- -5'
1487 5' -52.5 NC_001335.1 + 35782 0.68 0.732733
Target:  5'- gGGGCuaugcaGAGGCGAUCAGgAGccgcuACACCg -3'
miRNA:   3'- aCCUGc-----UUCCGUUGGUCgUCu----UGUGG- -5'
1487 5' -52.5 NC_001335.1 + 19053 0.68 0.732733
Target:  5'- aGGAUGAGGaguuccGCAaccGCCGGCucaaGACGCCg -3'
miRNA:   3'- aCCUGCUUC------CGU---UGGUCGuc--UUGUGG- -5'
1487 5' -52.5 NC_001335.1 + 14403 0.68 0.721849
Target:  5'- uUGGACGAGcgucGGCcacACCAGCcGAgGCACg -3'
miRNA:   3'- -ACCUGCUU----CCGu--UGGUCGuCU-UGUGg -5'
1487 5' -52.5 NC_001335.1 + 14822 0.68 0.721849
Target:  5'- cGGACG--GGCAGCgCAGcCAGGuCAUCg -3'
miRNA:   3'- aCCUGCuuCCGUUG-GUC-GUCUuGUGG- -5'
1487 5' -52.5 NC_001335.1 + 11817 0.68 0.721849
Target:  5'- gUGGAccCGGAcGGC-ACCGGCuccAACGCCg -3'
miRNA:   3'- -ACCU--GCUU-CCGuUGGUCGuc-UUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.