Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14872 | 3' | -51.7 | NC_003623.1 | + | 776 | 0.69 | 0.094849 |
Target: 5'- uGGAGGAaguGGuaugaCACUAGuGAUGAGCg -3' miRNA: 3'- -CCUUCUguuCCug---GUGGUC-CUACUCG- -5' |
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14872 | 3' | -51.7 | NC_003623.1 | + | 846 | 1.14 | 0.000017 |
Target: 5'- aGGAAGACAAGGACCACCAGGAUGAGCc -3' miRNA: 3'- -CCUUCUGUUCCUGGUGGUCCUACUCG- -5' |
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14872 | 3' | -51.7 | NC_003623.1 | + | 879 | 0.66 | 0.178297 |
Target: 5'- aGGAgagGGugAGGGAguUUugCAGGAUGAaGUc -3' miRNA: 3'- -CCU---UCugUUCCU--GGugGUCCUACU-CG- -5' |
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14872 | 3' | -51.7 | NC_003623.1 | + | 1388 | 0.69 | 0.101883 |
Target: 5'- aGGAAGAgAuGGAagagUACCGGGAcagGGGCa -3' miRNA: 3'- -CCUUCUgUuCCUg---GUGGUCCUa--CUCG- -5' |
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14872 | 3' | -51.7 | NC_003623.1 | + | 1785 | 0.71 | 0.068528 |
Target: 5'- aGGAAcGACGcucAGGGCUACUAuGAUGGGUa -3' miRNA: 3'- -CCUU-CUGU---UCCUGGUGGUcCUACUCG- -5' |
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14872 | 3' | -51.7 | NC_003623.1 | + | 2327 | 0.67 | 0.150112 |
Target: 5'- uGGGAcuGACAAGGugUAUaCAGGAUccGCa -3' miRNA: 3'- -CCUU--CUGUUCCugGUG-GUCCUAcuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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