miRNA: 3'- -UCUCCUA--AUC-GACCaUCUCCUCauua -5'
miRNA: 3'- -UC-UCCUaaUCGACCaUCUCCU-CAUUA- -5'
miRNA: 3'- -UCUCCUAAUCGACCAUCUCCUCAUUA- -5'
Results 1 - 3 of 3 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 14876 | 5' | -49.3 | NC_003623.1 | + | 873 | 0.66 | 0.200194 |
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Target: 5'- gGGAGGAUuuUGGaUUGGgGGAGGGGg--- -3' miRNA: 3'- -UCUCCUA--AUC-GACCaUCUCCUCauua -5' |
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| 14876 | 5' | -49.3 | NC_003623.1 | + | 591 | 0.67 | 0.173788 |
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Target: 5'- aAGuAGGG--AGCUGGgGGAGGAgGUGGUg -3' miRNA: 3'- -UC-UCCUaaUCGACCaUCUCCU-CAUUA- -5' |
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| 14876 | 5' | -49.3 | NC_003623.1 | + | 2042 | 1.06 | 0.000105 |
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Target: 5'- gAGAGGAUUAGCUGGUAGAGGAGUAAUc -3' miRNA: 3'- -UCUCCUAAUCGACCAUCUCCUCAUUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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