miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1488 3' -55.9 NC_001335.1 + 30673 0.66 0.719529
Target:  5'- uGCCcccaaaGGGCUUGgucAGCCaCGACUUCGGc -3'
miRNA:   3'- cCGG------UCCGAGCa--UUGGcGUUGGAGCC- -5'
1488 3' -55.9 NC_001335.1 + 1085 0.66 0.708936
Target:  5'- aGGCCGGGgaaGUAAagGCGGCCcCGGu -3'
miRNA:   3'- -CCGGUCCgagCAUUggCGUUGGaGCC- -5'
1488 3' -55.9 NC_001335.1 + 15651 0.66 0.698269
Target:  5'- cGCCuggauGGCgUCGUAGauguCCGCGAgcgcguagcgguCCUCGGu -3'
miRNA:   3'- cCGGu----CCG-AGCAUU----GGCGUU------------GGAGCC- -5'
1488 3' -55.9 NC_001335.1 + 45313 0.66 0.695057
Target:  5'- aGGCUacGGGUUCGUcgGGCCGCugucggcgaaguccGACCUgaaGGa -3'
miRNA:   3'- -CCGG--UCCGAGCA--UUGGCG--------------UUGGAg--CC- -5'
1488 3' -55.9 NC_001335.1 + 42000 0.66 0.68754
Target:  5'- cGGCCAGGC-CGcaAACgGCugauCCUgGGc -3'
miRNA:   3'- -CCGGUCCGaGCa-UUGgCGuu--GGAgCC- -5'
1488 3' -55.9 NC_001335.1 + 46367 0.66 0.676759
Target:  5'- aGCCAGcgcaGCUCGUuccUUGUcGCCUCGGu -3'
miRNA:   3'- cCGGUC----CGAGCAuu-GGCGuUGGAGCC- -5'
1488 3' -55.9 NC_001335.1 + 36709 0.66 0.676759
Target:  5'- uGGCCGGcGgUCGUGGuuGC--CCUCGu -3'
miRNA:   3'- -CCGGUC-CgAGCAUUggCGuuGGAGCc -5'
1488 3' -55.9 NC_001335.1 + 4463 0.66 0.665936
Target:  5'- cGCCAGGagUCGaaccuggAACCgGCGGCUUUGGa -3'
miRNA:   3'- cCGGUCCg-AGCa------UUGG-CGUUGGAGCC- -5'
1488 3' -55.9 NC_001335.1 + 10898 0.67 0.655082
Target:  5'- cGCCAGGa----GGCUGCAGCCgcUCGGg -3'
miRNA:   3'- cCGGUCCgagcaUUGGCGUUGG--AGCC- -5'
1488 3' -55.9 NC_001335.1 + 1755 0.67 0.655082
Target:  5'- cGGUCaAGGaccgCGUcACCGUGACCaUCGGc -3'
miRNA:   3'- -CCGG-UCCga--GCAuUGGCGUUGG-AGCC- -5'
1488 3' -55.9 NC_001335.1 + 48569 0.67 0.644208
Target:  5'- uGGUCGaccGGCUUGUacucGACCGaaguGACCUCGa -3'
miRNA:   3'- -CCGGU---CCGAGCA----UUGGCg---UUGGAGCc -5'
1488 3' -55.9 NC_001335.1 + 48325 0.67 0.644208
Target:  5'- gGGCCAGcaGgaCGUGGCCGCuGCggUGGa -3'
miRNA:   3'- -CCGGUC--CgaGCAUUGGCGuUGgaGCC- -5'
1488 3' -55.9 NC_001335.1 + 9685 0.67 0.644208
Target:  5'- uGCCGuacaGCuUCGUGGCUGCGucgGCCUUGGc -3'
miRNA:   3'- cCGGUc---CG-AGCAUUGGCGU---UGGAGCC- -5'
1488 3' -55.9 NC_001335.1 + 31654 0.67 0.644208
Target:  5'- uGCCAGcucacggauCUCGgcauCCGCGGCCUCGu -3'
miRNA:   3'- cCGGUCc--------GAGCauu-GGCGUUGGAGCc -5'
1488 3' -55.9 NC_001335.1 + 46414 0.67 0.632234
Target:  5'- cGCCAGGCgcauccUCGCAccaagaacgucaaGCCUCGGa -3'
miRNA:   3'- cCGGUCCGagcauuGGCGU-------------UGGAGCC- -5'
1488 3' -55.9 NC_001335.1 + 7291 0.67 0.622436
Target:  5'- cGCgGGGCUCGaGGUCGCuGCCUCa- -3'
miRNA:   3'- cCGgUCCGAGCaUUGGCGuUGGAGcc -5'
1488 3' -55.9 NC_001335.1 + 50757 0.67 0.622436
Target:  5'- cGGCCGGGggCGg---CGC-ACCUUGGg -3'
miRNA:   3'- -CCGGUCCgaGCauugGCGuUGGAGCC- -5'
1488 3' -55.9 NC_001335.1 + 22385 0.67 0.611559
Target:  5'- uGGaguGGCUgcaGACCGCAGCCUCGa -3'
miRNA:   3'- -CCgguCCGAgcaUUGGCGUUGGAGCc -5'
1488 3' -55.9 NC_001335.1 + 40066 0.67 0.600698
Target:  5'- aGGCCGGugaaCUCcUGGCCGUgGACCUUGGu -3'
miRNA:   3'- -CCGGUCc---GAGcAUUGGCG-UUGGAGCC- -5'
1488 3' -55.9 NC_001335.1 + 42338 0.68 0.589864
Target:  5'- cGGCCGaccGGCgCG-AGCCGCGugcgUCUCGGc -3'
miRNA:   3'- -CCGGU---CCGaGCaUUGGCGUu---GGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.