Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1488 | 5' | -55.5 | NC_001335.1 | + | 1377 | 0.66 | 0.743912 |
Target: 5'- uCUCC-AGCUCGGUggggggCACCgGGGUGuuGg -3' miRNA: 3'- -GAGGcUUGAGCCA------GUGGgCUCACugC- -5' |
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1488 | 5' | -55.5 | NC_001335.1 | + | 40122 | 0.66 | 0.743912 |
Target: 5'- aUCCGGGCUCuccgGGUCgAUCCGcuUGugGg -3' miRNA: 3'- gAGGCUUGAG----CCAG-UGGGCucACugC- -5' |
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1488 | 5' | -55.5 | NC_001335.1 | + | 36335 | 0.66 | 0.712535 |
Target: 5'- uUCCGAugUCGGagGCCgGuucucGGUcGACGg -3' miRNA: 3'- gAGGCUugAGCCagUGGgC-----UCA-CUGC- -5' |
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1488 | 5' | -55.5 | NC_001335.1 | + | 9088 | 0.67 | 0.65884 |
Target: 5'- -cCCGAGCuUCGGUCGaugaCCGAcGcGGCGg -3' miRNA: 3'- gaGGCUUG-AGCCAGUg---GGCU-CaCUGC- -5' |
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1488 | 5' | -55.5 | NC_001335.1 | + | 20686 | 0.7 | 0.4884 |
Target: 5'- uCUCCGGGCUCGaggacaucGUCACCgGAcugGGCGa -3' miRNA: 3'- -GAGGCUUGAGC--------CAGUGGgCUca-CUGC- -5' |
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1488 | 5' | -55.5 | NC_001335.1 | + | 23205 | 1.1 | 0.000976 |
Target: 5'- aCUCCGAACUCGGUCACCCGAGUGACGa -3' miRNA: 3'- -GAGGCUUGAGCCAGUGGGCUCACUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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