Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1489 | 3' | -56.3 | NC_001335.1 | + | 30295 | 0.66 | 0.698508 |
Target: 5'- gGUGGugccGGUGGAGCUGggagacguguUCAUcgAGGACGUg -3' miRNA: 3'- gCACU----CCGCCUUGGC----------AGUG--UCCUGCG- -5' |
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1489 | 3' | -56.3 | NC_001335.1 | + | 6762 | 0.66 | 0.643595 |
Target: 5'- aCGUGAauaccccuGGCGGGcaugacgauccgaACCGUCugGcGACGUu -3' miRNA: 3'- -GCACU--------CCGCCU-------------UGGCAGugUcCUGCG- -5' |
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1489 | 3' | -56.3 | NC_001335.1 | + | 48794 | 0.67 | 0.633839 |
Target: 5'- --cGAGGUGG--UCGa-GCAGGACGCg -3' miRNA: 3'- gcaCUCCGCCuuGGCagUGUCCUGCG- -5' |
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1489 | 3' | -56.3 | NC_001335.1 | + | 9856 | 0.68 | 0.537271 |
Target: 5'- cCGUGGGGCucggggagccuGGGACCGUCGgGucGGCGUc -3' miRNA: 3'- -GCACUCCG-----------CCUUGGCAGUgUc-CUGCG- -5' |
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1489 | 3' | -56.3 | NC_001335.1 | + | 13925 | 0.68 | 0.526799 |
Target: 5'- cCG-GAGGauCGGGGCCGcUACugccuGGACGCg -3' miRNA: 3'- -GCaCUCC--GCCUUGGCaGUGu----CCUGCG- -5' |
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1489 | 3' | -56.3 | NC_001335.1 | + | 30468 | 0.69 | 0.485742 |
Target: 5'- -cUGAGGCGGAAUC----CAGGugGCu -3' miRNA: 3'- gcACUCCGCCUUGGcaguGUCCugCG- -5' |
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1489 | 3' | -56.3 | NC_001335.1 | + | 46699 | 0.69 | 0.484735 |
Target: 5'- cCGUGAGGCuGGcguacACCGUCuugcaguGCAGGGCc- -3' miRNA: 3'- -GCACUCCG-CCu----UGGCAG-------UGUCCUGcg -5' |
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1489 | 3' | -56.3 | NC_001335.1 | + | 10275 | 0.69 | 0.474716 |
Target: 5'- uCGUGcagggcuGGGCGaGggUCGcCACcGGGCGCg -3' miRNA: 3'- -GCAC-------UCCGC-CuuGGCaGUGuCCUGCG- -5' |
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1489 | 3' | -56.3 | NC_001335.1 | + | 24570 | 1.12 | 0.000547 |
Target: 5'- aCGUGAGGCGGAACCGUCACAGGACGCu -3' miRNA: 3'- -GCACUCCGCCUUGGCAGUGUCCUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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