miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1489 5' -50.1 NC_001335.1 + 34414 0.66 0.937838
Target:  5'- cGGUGgagugGCCAGCGGCccgCUgccGUUCg -3'
miRNA:   3'- aCCGCaa---CGGUUGCUGcuaGAa--CAAG- -5'
1489 5' -50.1 NC_001335.1 + 25884 0.66 0.925223
Target:  5'- gGGCGaacgccagcccGCCGACGGCGAgg--GUUCc -3'
miRNA:   3'- aCCGCaa---------CGGUUGCUGCUagaaCAAG- -5'
1489 5' -50.1 NC_001335.1 + 50259 0.66 0.920273
Target:  5'- gUGGCGUUGCCGcccuuggugACGugGA-CguaGUUg -3'
miRNA:   3'- -ACCGCAACGGU---------UGCugCUaGaa-CAAg -5'
1489 5' -50.1 NC_001335.1 + 5935 0.67 0.892649
Target:  5'- cUGGCcugUGCCGugGACGGUgaacagccagggCUUGcUCa -3'
miRNA:   3'- -ACCGca-ACGGUugCUGCUA------------GAACaAG- -5'
1489 5' -50.1 NC_001335.1 + 30311 0.68 0.868892
Target:  5'- cGGUGgucucagUGUCGACGGCGAggcaGUUCa -3'
miRNA:   3'- aCCGCa------ACGGUUGCUGCUagaaCAAG- -5'
1489 5' -50.1 NC_001335.1 + 8556 0.69 0.794412
Target:  5'- cUGGUGUUGCUGGCGA-GAUcCUUGg-- -3'
miRNA:   3'- -ACCGCAACGGUUGCUgCUA-GAACaag -5'
1489 5' -50.1 NC_001335.1 + 40682 0.69 0.784147
Target:  5'- cGGCGaugagUGCgGugGCGAUGAUCUucuucaUGUUCg -3'
miRNA:   3'- aCCGCa----ACGgU--UGCUGCUAGA------ACAAG- -5'
1489 5' -50.1 NC_001335.1 + 27173 0.7 0.763113
Target:  5'- gUGGCGgcaagGCCGaugauggcugcuGCGAUGGUCUUcUUCa -3'
miRNA:   3'- -ACCGCaa---CGGU------------UGCUGCUAGAAcAAG- -5'
1489 5' -50.1 NC_001335.1 + 29557 0.7 0.752369
Target:  5'- cUGGCGcUUGCCAgucucgguGCGACcgguGAUCUUGa-- -3'
miRNA:   3'- -ACCGC-AACGGU--------UGCUG----CUAGAACaag -5'
1489 5' -50.1 NC_001335.1 + 7878 0.71 0.708184
Target:  5'- cGGCugccgUGUCAGCGACGGcCUgcUGUUCg -3'
miRNA:   3'- aCCGca---ACGGUUGCUGCUaGA--ACAAG- -5'
1489 5' -50.1 NC_001335.1 + 22558 0.72 0.651211
Target:  5'- cGGCGg-GCuCAGCGACGGUCUgg-UCc -3'
miRNA:   3'- aCCGCaaCG-GUUGCUGCUAGAacaAG- -5'
1489 5' -50.1 NC_001335.1 + 24612 1.1 0.002757
Target:  5'- uUGGCGUUGCCAACGACGAUCUUGUUCc -3'
miRNA:   3'- -ACCGCAACGGUUGCUGCUAGAACAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.