miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
149 5' -56.8 AC_000006.1 + 20940 0.66 0.520282
Target:  5'- cGGGCGAagaGGCC-ACGGC-GCuUCgGCg -3'
miRNA:   3'- -CCCGCU---CUGGuUGCCGaCGuAGgUGa -5'
149 5' -56.8 AC_000006.1 + 23711 0.66 0.509527
Target:  5'- aGGGUGAccagGACC-ACGGCcagcaugagcuUGCG-CCGCUg -3'
miRNA:   3'- -CCCGCU----CUGGuUGCCG-----------ACGUaGGUGA- -5'
149 5' -56.8 AC_000006.1 + 8869 0.66 0.508457
Target:  5'- cGGUGAcgaagaaguacauGAuCCAGCGGCgcagggGCAUCuCGCUg -3'
miRNA:   3'- cCCGCU-------------CU-GGUUGCCGa-----CGUAG-GUGA- -5'
149 5' -56.8 AC_000006.1 + 13245 0.66 0.488306
Target:  5'- uGGCGuucuuGACCcgcGGCGGCUGCAgcaGCg -3'
miRNA:   3'- cCCGCu----CUGG---UUGCCGACGUaggUGa -5'
149 5' -56.8 AC_000006.1 + 21053 0.67 0.457285
Target:  5'- cGGGgGuGcCCAACGGCaUGCuacaaucgCCACa -3'
miRNA:   3'- -CCCgCuCuGGUUGCCG-ACGua------GGUGa -5'
149 5' -56.8 AC_000006.1 + 17645 0.67 0.447181
Target:  5'- cGGGCGGGGac-GCGGCgcacgGCGgucgCCACc -3'
miRNA:   3'- -CCCGCUCUgguUGCCGa----CGUa---GGUGa -5'
149 5' -56.8 AC_000006.1 + 11479 0.67 0.437201
Target:  5'- uGGGCGuGuACCGcaACGaCcGCAUCCACa -3'
miRNA:   3'- -CCCGCuC-UGGU--UGCcGaCGUAGGUGa -5'
149 5' -56.8 AC_000006.1 + 8704 0.68 0.386545
Target:  5'- aGGCGcccAGGCCGcucucguuccagacGCGGCUGUAgaCCACg -3'
miRNA:   3'- cCCGC---UCUGGU--------------UGCCGACGUa-GGUGa -5'
149 5' -56.8 AC_000006.1 + 17368 0.68 0.371136
Target:  5'- aGGGCGAGA--AGCGGCcGCggCCAg- -3'
miRNA:   3'- -CCCGCUCUggUUGCCGaCGuaGGUga -5'
149 5' -56.8 AC_000006.1 + 5351 0.68 0.36227
Target:  5'- uGGGCGcaagaaAGACCGAcuCGGgaGCAaaagcgUCCGCUc -3'
miRNA:   3'- -CCCGC------UCUGGUU--GCCgaCGU------AGGUGA- -5'
149 5' -56.8 AC_000006.1 + 9316 0.69 0.344983
Target:  5'- cGGGaGAuGACCGGCGGCgucuucacgcUGCGUCCucGCg -3'
miRNA:   3'- -CCCgCU-CUGGUUGCCG----------ACGUAGG--UGa -5'
149 5' -56.8 AC_000006.1 + 8225 0.69 0.336565
Target:  5'- cGGGUGAG-UUggUGGCcGUGUCCACg -3'
miRNA:   3'- -CCCGCUCuGGuuGCCGaCGUAGGUGa -5'
149 5' -56.8 AC_000006.1 + 12505 0.69 0.328297
Target:  5'- aGGGCGcGAUCAGCaGCaGCAgcagCCGCg -3'
miRNA:   3'- -CCCGCuCUGGUUGcCGaCGUa---GGUGa -5'
149 5' -56.8 AC_000006.1 + 9615 0.71 0.2539
Target:  5'- gGGGCauGGCCgAGCGGCUccGCAUCCAg- -3'
miRNA:   3'- -CCCGcuCUGG-UUGCCGA--CGUAGGUga -5'
149 5' -56.8 AC_000006.1 + 23873 0.72 0.228256
Target:  5'- aGGGCGAGGCgCGGCGGgaCUaUGUCCGCg -3'
miRNA:   3'- -CCCGCUCUG-GUUGCC--GAcGUAGGUGa -5'
149 5' -56.8 AC_000006.1 + 16619 0.72 0.216275
Target:  5'- cGGGUGgcGGugCGGCGGCgGCGUuuGCUg -3'
miRNA:   3'- -CCCGC--UCugGUUGCCGaCGUAggUGA- -5'
149 5' -56.8 AC_000006.1 + 30536 1.1 0.000296
Target:  5'- cGGGCGAGACCAACGGCUGCAUCCACUg -3'
miRNA:   3'- -CCCGCUCUGGUUGCCGACGUAGGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.