miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1490 3' -56 NC_001335.1 + 34295 0.66 0.615039
Target:  5'- uCCGagaaGAUGUUGGCGAccuucuGCAGCAUc- -3'
miRNA:   3'- uGGCa---CUACGACCGCUu-----CGUCGUGag -5'
1490 3' -56 NC_001335.1 + 4860 0.66 0.613921
Target:  5'- aGCCgGUGAUGCUcgucgGGCuccagcacgGAGGCGGCggggucuACUCg -3'
miRNA:   3'- -UGG-CACUACGA-----CCG---------CUUCGUCG-------UGAG- -5'
1490 3' -56 NC_001335.1 + 25093 0.68 0.46403
Target:  5'- cGCCGcaucuacccGGUGCUaGGUGAAGUGGCGgUCa -3'
miRNA:   3'- -UGGCa--------CUACGA-CCGCUUCGUCGUgAG- -5'
1490 3' -56 NC_001335.1 + 46487 0.68 0.46403
Target:  5'- gGCCGUGGaaucgGCcGGCGggGgAGCguugguGCUCu -3'
miRNA:   3'- -UGGCACUa----CGaCCGCuuCgUCG------UGAG- -5'
1490 3' -56 NC_001335.1 + 32899 0.69 0.44394
Target:  5'- gGCCGgcucggGCUGGgcaGggGCGGUGCUCc -3'
miRNA:   3'- -UGGCacua--CGACCg--CuuCGUCGUGAG- -5'
1490 3' -56 NC_001335.1 + 46698 0.69 0.422419
Target:  5'- cCCGUGAgGCUGGCGuacaccgucuuGCAGUGCa- -3'
miRNA:   3'- uGGCACUaCGACCGCuu---------CGUCGUGag -5'
1490 3' -56 NC_001335.1 + 13705 0.69 0.41475
Target:  5'- uCgGUGAUGgUGGCcggGAAGUAGCcCUCg -3'
miRNA:   3'- uGgCACUACgACCG---CUUCGUCGuGAG- -5'
1490 3' -56 NC_001335.1 + 19453 0.7 0.405285
Target:  5'- gGCC-UGGUcGCUGGCGA-GCGgGUGCUCg -3'
miRNA:   3'- -UGGcACUA-CGACCGCUuCGU-CGUGAG- -5'
1490 3' -56 NC_001335.1 + 16257 0.7 0.36006
Target:  5'- aGCCGgc--GCUGGCGuAGUcGCGCUCg -3'
miRNA:   3'- -UGGCacuaCGACCGCuUCGuCGUGAG- -5'
1490 3' -56 NC_001335.1 + 30260 0.72 0.302884
Target:  5'- uACCGaa---CUGGaCGAGGCGGCACUCg -3'
miRNA:   3'- -UGGCacuacGACC-GCUUCGUCGUGAG- -5'
1490 3' -56 NC_001335.1 + 26098 1.1 0.000555
Target:  5'- aACCGUGAUGCUGGCGAAGCAGCACUCg -3'
miRNA:   3'- -UGGCACUACGACCGCUUCGUCGUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.