miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1490 5' -53.9 NC_001335.1 + 45736 0.66 0.7816
Target:  5'- cCGAAcUGCCaGUCUCgugagcGCCaGCGGAACc -3'
miRNA:   3'- -GCUUcAUGGaCAGAG------CGGcCGUCUUG- -5'
1490 5' -53.9 NC_001335.1 + 25272 0.67 0.729407
Target:  5'- cCGAA--GCCUGgCUCGCgGGCgAGAAg -3'
miRNA:   3'- -GCUUcaUGGACaGAGCGgCCG-UCUUg -5'
1490 5' -53.9 NC_001335.1 + 39438 0.68 0.674708
Target:  5'- gGgcGUaagGCgCUGUCUCGCUGGUGGGu- -3'
miRNA:   3'- gCuuCA---UG-GACAGAGCGGCCGUCUug -5'
1490 5' -53.9 NC_001335.1 + 30305 0.68 0.663598
Target:  5'- aCGAA--GCCUGgguggUGCCGGUGGAGCu -3'
miRNA:   3'- -GCUUcaUGGACaga--GCGGCCGUCUUG- -5'
1490 5' -53.9 NC_001335.1 + 38891 0.68 0.656916
Target:  5'- -cGAGUACCUG-CUgaaccCGCCGGCcguccaagucaucggGGAGCg -3'
miRNA:   3'- gcUUCAUGGACaGA-----GCGGCCG---------------UCUUG- -5'
1490 5' -53.9 NC_001335.1 + 35159 0.69 0.596674
Target:  5'- aGggGUGCUUgGUCUCGuCCcGCuGGACg -3'
miRNA:   3'- gCuuCAUGGA-CAGAGC-GGcCGuCUUG- -5'
1490 5' -53.9 NC_001335.1 + 33804 0.7 0.552541
Target:  5'- uCGAGGUAgUCgGUCUUGCCGGCcggcgucacGAACg -3'
miRNA:   3'- -GCUUCAU-GGaCAGAGCGGCCGu--------CUUG- -5'
1490 5' -53.9 NC_001335.1 + 9642 0.72 0.433847
Target:  5'- gGGAGUGCUcggGUCUCGCCagacggucuccauGCGGAGCa -3'
miRNA:   3'- gCUUCAUGGa--CAGAGCGGc------------CGUCUUG- -5'
1490 5' -53.9 NC_001335.1 + 38183 0.73 0.38118
Target:  5'- cCGAAGUACCUGUCgauGCCagGGgAGAAg -3'
miRNA:   3'- -GCUUCAUGGACAGag-CGG--CCgUCUUg -5'
1490 5' -53.9 NC_001335.1 + 29943 0.74 0.329688
Target:  5'- cCGGAGUACCUG-CUguaCGCCGGgAuGGACa -3'
miRNA:   3'- -GCUUCAUGGACaGA---GCGGCCgU-CUUG- -5'
1490 5' -53.9 NC_001335.1 + 6933 0.74 0.329688
Target:  5'- aGgcGUACCUG-CUCGUCGGUGGGGa -3'
miRNA:   3'- gCuuCAUGGACaGAGCGGCCGUCUUg -5'
1490 5' -53.9 NC_001335.1 + 8406 0.75 0.298312
Target:  5'- uGAGGUAguCCUGUCUCGCCcgaacGCgAGGACa -3'
miRNA:   3'- gCUUCAU--GGACAGAGCGGc----CG-UCUUG- -5'
1490 5' -53.9 NC_001335.1 + 26133 0.89 0.033621
Target:  5'- cCGAAGUACCUGUCUCGC-GGcCAGAACc -3'
miRNA:   3'- -GCUUCAUGGACAGAGCGgCC-GUCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.