miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1492 5' -63.1 NC_001335.1 + 48332 0.66 0.328714
Target:  5'- gCGCGAGCgccgcaaggugGUCCACgCGGCaucguaGGCgaGCUGa -3'
miRNA:   3'- -GCGCUCGa----------CAGGUG-GCCG------UCGg-CGGC- -5'
1492 5' -63.1 NC_001335.1 + 4929 0.66 0.30643
Target:  5'- cCGaCGAGCa--UCACCGGCuugaucggcaaGGCCGCUGg -3'
miRNA:   3'- -GC-GCUCGacaGGUGGCCG-----------UCGGCGGC- -5'
1492 5' -63.1 NC_001335.1 + 31784 0.66 0.303548
Target:  5'- uCGCGGGcCUGcuugcgcggcaagCC-CCGGuCAGCCaGCCGg -3'
miRNA:   3'- -GCGCUC-GACa------------GGuGGCC-GUCGG-CGGC- -5'
1492 5' -63.1 NC_001335.1 + 1346 0.67 0.299264
Target:  5'- --gGGGCUGcugccaccgCCGCCGGCuccacuuccGCCGCCa -3'
miRNA:   3'- gcgCUCGACa--------GGUGGCCGu--------CGGCGGc -5'
1492 5' -63.1 NC_001335.1 + 37731 0.67 0.292228
Target:  5'- uGCGAGCgaGUCaaagacaaGCUGaCGGCUGCCGg -3'
miRNA:   3'- gCGCUCGa-CAGg-------UGGCcGUCGGCGGC- -5'
1492 5' -63.1 NC_001335.1 + 16131 0.67 0.278545
Target:  5'- -cCGAGC---CC-CCGGCuGCCGCCGa -3'
miRNA:   3'- gcGCUCGacaGGuGGCCGuCGGCGGC- -5'
1492 5' -63.1 NC_001335.1 + 6012 0.67 0.271897
Target:  5'- cCGaUGGGCUG-CCACCGGUAGauGUCa -3'
miRNA:   3'- -GC-GCUCGACaGGUGGCCGUCggCGGc -5'
1492 5' -63.1 NC_001335.1 + 43296 0.67 0.265377
Target:  5'- gGUGAGCUucgaGUCCgggacuacaagACCGGCAaCuCGCCGg -3'
miRNA:   3'- gCGCUCGA----CAGG-----------UGGCCGUcG-GCGGC- -5'
1492 5' -63.1 NC_001335.1 + 16850 0.67 0.265377
Target:  5'- cCGcCGAGCUGUCCcaucGCCuGCAGaCCggacuccaugaGCCGg -3'
miRNA:   3'- -GC-GCUCGACAGG----UGGcCGUC-GG-----------CGGC- -5'
1492 5' -63.1 NC_001335.1 + 48902 0.67 0.258985
Target:  5'- aGCGGGCUGaccggagaagCUACCGcGUccGGUCGCCGc -3'
miRNA:   3'- gCGCUCGACa---------GGUGGC-CG--UCGGCGGC- -5'
1492 5' -63.1 NC_001335.1 + 38357 0.68 0.252719
Target:  5'- uCGCGGGCUGgCCgGCCGaGCGGaacuaaGCCGu -3'
miRNA:   3'- -GCGCUCGACaGG-UGGC-CGUCgg----CGGC- -5'
1492 5' -63.1 NC_001335.1 + 51531 0.68 0.252719
Target:  5'- gGUG-GCUGUCaaACCGGagaaucuuGCCGCCGg -3'
miRNA:   3'- gCGCuCGACAGg-UGGCCgu------CGGCGGC- -5'
1492 5' -63.1 NC_001335.1 + 15628 0.69 0.207523
Target:  5'- cCGCGAGCgcguagcgguccucgGUCCAgccCCGGUAcuGCUGCCc -3'
miRNA:   3'- -GCGCUCGa--------------CAGGU---GGCCGU--CGGCGGc -5'
1492 5' -63.1 NC_001335.1 + 17363 0.69 0.206998
Target:  5'- gGUGGGUgucUCCAUCGGCGGCgCGCUc -3'
miRNA:   3'- gCGCUCGac-AGGUGGCCGUCG-GCGGc -5'
1492 5' -63.1 NC_001335.1 + 17540 0.69 0.201814
Target:  5'- aGCGAucuGCUGggcUCCGCUGGagaAGCUGCUGa -3'
miRNA:   3'- gCGCU---CGAC---AGGUGGCCg--UCGGCGGC- -5'
1492 5' -63.1 NC_001335.1 + 43749 0.69 0.191784
Target:  5'- -aUGGGCUcGUCCugCGGCguGGuuGCCGc -3'
miRNA:   3'- gcGCUCGA-CAGGugGCCG--UCggCGGC- -5'
1492 5' -63.1 NC_001335.1 + 2329 0.69 0.191784
Target:  5'- aGUGAGCUGg--GCCGGCucaGGCCGgCGa -3'
miRNA:   3'- gCGCUCGACaggUGGCCG---UCGGCgGC- -5'
1492 5' -63.1 NC_001335.1 + 43180 0.69 0.191784
Target:  5'- aCGcCGAGCUGgaagucgUCAcCCGGCgAGuuGCCGg -3'
miRNA:   3'- -GC-GCUCGACa------GGU-GGCCG-UCggCGGC- -5'
1492 5' -63.1 NC_001335.1 + 29019 0.7 0.186935
Target:  5'- aCGCGA--UGg--GCCGGCGGCUGCCGg -3'
miRNA:   3'- -GCGCUcgACaggUGGCCGUCGGCGGC- -5'
1492 5' -63.1 NC_001335.1 + 18247 0.7 0.170363
Target:  5'- cCGCGAggagucgaagaacgcGCUGUCCGUCGuuGGCCGCUGa -3'
miRNA:   3'- -GCGCU---------------CGACAGGUGGCcgUCGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.