miRNA: 3'- gcgCUCGACa--------GGUGGCCGu--------CGGCGGc -5'
miRNA: 3'- -GCGCUC-GACa------------GGuGGCC-GUCGG-CGGC- -5'
miRNA: 3'- -GC-GCUCGacaGGUGGCCG-----------UCGGCGGC- -5'
miRNA: 3'- -GCGCUCGa----------CAGGUG-GCCG------UCGg-CGGC- -5'
Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 1492 | 5' | -63.1 | NC_001335.1 | + | 1346 | 0.67 | 0.299264 |
|
Target: 5'- --gGGGCUGcugccaccgCCGCCGGCuccacuuccGCCGCCa -3' miRNA: 3'- gcgCUCGACa--------GGUGGCCGu--------CGGCGGc -5' |
|||||||
| 1492 | 5' | -63.1 | NC_001335.1 | + | 31784 | 0.66 | 0.303548 |
|
Target: 5'- uCGCGGGcCUGcuugcgcggcaagCC-CCGGuCAGCCaGCCGg -3' miRNA: 3'- -GCGCUC-GACa------------GGuGGCC-GUCGG-CGGC- -5' |
|||||||
| 1492 | 5' | -63.1 | NC_001335.1 | + | 4929 | 0.66 | 0.30643 |
|
Target: 5'- cCGaCGAGCa--UCACCGGCuugaucggcaaGGCCGCUGg -3' miRNA: 3'- -GC-GCUCGacaGGUGGCCG-----------UCGGCGGC- -5' |
|||||||
| 1492 | 5' | -63.1 | NC_001335.1 | + | 48332 | 0.66 | 0.328714 |
|
Target: 5'- gCGCGAGCgccgcaaggugGUCCACgCGGCaucguaGGCgaGCUGa -3' miRNA: 3'- -GCGCUCGa----------CAGGUG-GCCG------UCGg-CGGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home