miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
14927	3'	-40.9	NC_003663.2	+	131207	0.7	1
	Target:  5'- ---aUCgaAAAGAACGGAGAAUuguuGUCUGu -3' miRNA:   3'- acaaAGa-UUUCUUGCCUCUUA----UAGAU- -5'
14927	3'	-40.9	NC_003663.2	+	3949	0.67	1
	Target:  5'- aGUUgCUAccucauuAAGAACGGAGAAgUAUCc- -3' miRNA:   3'- aCAAaGAU-------UUCUUGCCUCUU-AUAGau -5'
14927	3'	-40.9	NC_003663.2	+	59916	0.67	1
	Target:  5'- cGUcaUUCUAAAaGACGGAGGAUcuccAUCa- -3' miRNA:   3'- aCA--AAGAUUUcUUGCCUCUUA----UAGau -5'
14927	3'	-40.9	NC_003663.2	+	176695	0.67	1
	Target:  5'- cGggUCauguGAcGACGGAGAAUAUCUu -3' miRNA:   3'- aCaaAGau--UUcUUGCCUCUUAUAGAu -5'
14927	3'	-40.9	NC_003663.2	+	145029	0.67	1
	Target:  5'- --aUUCUuugguAGAAUGGGGAAcAUCUAc -3' miRNA:   3'- acaAAGAuu---UCUUGCCUCUUaUAGAU- -5'
14927	3'	-40.9	NC_003663.2	+	220551	0.67	1
	Target:  5'- aGUUgCUAccucauuAAGAACGGAGAAgUAUCc- -3' miRNA:   3'- aCAAaGAU-------UUCUUGCCUCUU-AUAGau -5'
14927	3'	-40.9	NC_003663.2	+	70981	0.77	0.998959
	Target:  5'- aUGUUgUCUGAAGGACGGAuGAAU-UCUAa -3' miRNA:   3'- -ACAA-AGAUUUCUUGCCU-CUUAuAGAU- -5'
14927	3'	-40.9	NC_003663.2	+	70692	1.09	0.123725
	Target:  5'- cUGUUUCUAAAGAACGGAGAAUAUCUAu -3' miRNA:   3'- -ACAAAGAUUUCUUGCCUCUUAUAGAU- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home