Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1493 | 3' | -55.1 | NC_001335.1 | + | 29071 | 0.67 | 0.622876 |
Target: 5'- cGGCUgagcaagaagcUGGCGAUgGAAGC-UgGCCGCAa -3' miRNA: 3'- -CCGA-----------GUCGCUA-CUUCGuAgCGGCGUg -5' |
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1493 | 3' | -55.1 | NC_001335.1 | + | 29178 | 0.67 | 0.632913 |
Target: 5'- aGGuCUaCGGCGGUGggGCGaaggcucUCGCUGagGCa -3' miRNA: 3'- -CC-GA-GUCGCUACuuCGU-------AGCGGCg-UG- -5' |
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1493 | 3' | -55.1 | NC_001335.1 | + | 29299 | 1.12 | 0.000513 |
Target: 5'- uGGCUCAGCGAUGAAGCAUCGCCGCACg -3' miRNA: 3'- -CCGAGUCGCUACUUCGUAGCGGCGUG- -5' |
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1493 | 3' | -55.1 | NC_001335.1 | + | 31875 | 0.67 | 0.611732 |
Target: 5'- cGGCU-GGCuGAccGggGC-UUGCCGCGCa -3' miRNA: 3'- -CCGAgUCG-CUa-CuuCGuAGCGGCGUG- -5' |
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1493 | 3' | -55.1 | NC_001335.1 | + | 32677 | 0.69 | 0.523985 |
Target: 5'- cGGCggCGGCGGUGGccagcAGCAgucucgCGCCcCGCa -3' miRNA: 3'- -CCGa-GUCGCUACU-----UCGUa-----GCGGcGUG- -5' |
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1493 | 3' | -55.1 | NC_001335.1 | + | 34292 | 0.66 | 0.70053 |
Target: 5'- cGCUCAGUGuguuGUGGccGGCGgugugCGCCGguCg -3' miRNA: 3'- cCGAGUCGC----UACU--UCGUa----GCGGCguG- -5' |
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1493 | 3' | -55.1 | NC_001335.1 | + | 38013 | 0.68 | 0.589508 |
Target: 5'- aGCUCGGCGGUGAucGUGUCGaguucucccUCGCAg -3' miRNA: 3'- cCGAGUCGCUACUu-CGUAGC---------GGCGUg -5' |
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1493 | 3' | -55.1 | NC_001335.1 | + | 38045 | 0.74 | 0.245233 |
Target: 5'- gGGCUCAGCGGagcccaGAAGUGgaaGCCGUACu -3' miRNA: 3'- -CCGAGUCGCUa-----CUUCGUag-CGGCGUG- -5' |
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1493 | 3' | -55.1 | NC_001335.1 | + | 39101 | 0.66 | 0.70053 |
Target: 5'- -uCUCGGUGAUGAGuagcGCAUCGUgGCc- -3' miRNA: 3'- ccGAGUCGCUACUU----CGUAGCGgCGug -5' |
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1493 | 3' | -55.1 | NC_001335.1 | + | 46117 | 0.72 | 0.366817 |
Target: 5'- uGCUCGGCGAUGug----CGCUGCGCu -3' miRNA: 3'- cCGAGUCGCUACuucguaGCGGCGUG- -5' |
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1493 | 3' | -55.1 | NC_001335.1 | + | 46169 | 0.66 | 0.67187 |
Target: 5'- -cCUCGGCGAUGAucccaGGCAggUUGCCuagaaccaccgccaaGCACa -3' miRNA: 3'- ccGAGUCGCUACU-----UCGU--AGCGG---------------CGUG- -5' |
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1493 | 3' | -55.1 | NC_001335.1 | + | 46250 | 0.69 | 0.481871 |
Target: 5'- cGC-CAGCGcGUGGuuCAUCGCCGCGu -3' miRNA: 3'- cCGaGUCGC-UACUucGUAGCGGCGUg -5' |
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1493 | 3' | -55.1 | NC_001335.1 | + | 46266 | 0.66 | 0.704903 |
Target: 5'- uGCUUGGCGGUGGuucuaGGCAaccugccugggaucaUCGCCGagGCa -3' miRNA: 3'- cCGAGUCGCUACU-----UCGU---------------AGCGGCg-UG- -5' |
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1493 | 3' | -55.1 | NC_001335.1 | + | 46422 | 0.67 | 0.645179 |
Target: 5'- uGGCUCuGCGccaGgcGCAUCcUCGCACc -3' miRNA: 3'- -CCGAGuCGCua-CuuCGUAGcGGCGUG- -5' |
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1493 | 3' | -55.1 | NC_001335.1 | + | 46476 | 0.69 | 0.481871 |
Target: 5'- cGGC-CGGCGggGGAGCGUUGgUGCu- -3' miRNA: 3'- -CCGaGUCGCuaCUUCGUAGCgGCGug -5' |
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1493 | 3' | -55.1 | NC_001335.1 | + | 49398 | 0.66 | 0.689551 |
Target: 5'- cGCUgCGGCGgcGAGGU-UUGCCGCuACu -3' miRNA: 3'- cCGA-GUCGCuaCUUCGuAGCGGCG-UG- -5' |
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1493 | 3' | -55.1 | NC_001335.1 | + | 49464 | 0.69 | 0.522915 |
Target: 5'- uGGCUCGGUGGgcagccucgcgGAAGgucagccCGUCGUCGUACg -3' miRNA: 3'- -CCGAGUCGCUa----------CUUC-------GUAGCGGCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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